Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4842 ATGCAGCAAGGTGATCAAACAGTTCTTAGCTTGAGGCCTGGTGGTGGTCGAGGAAACAGGCTTCTCGCTCCTAGATTCGATTCTTCCTCTTCCAATTCACCTGCTTTTGGTTCCTTTTCATCTGATCTTTCTCATCTTCGTCCTAATGCTGGTGCTTCTTCTCTCCTCGCTTTCAAGGTTGGAGATTCGCAGTTCGAAAGCCGTGAGCGTGTGCGATATACCAAAGAAGAGCTTTTACATATTAGAGAGACTCTTGAGGAGACCCCTGAGGATATTTTAAAGCTCAGGCATGATATTGATGCTGAACTTTTTGGTGAAGATCAAAGTTGGGGCCGTGTAGAAAACAATCCCCCAACTCAAATTCAAAACCGATACTCTGAACCAGATAACCGTGACTGGCGTGGCCGTTCTGCACAACCTCCTGCTAACGCAGATGAGAGGTCTTGGGATAATATCAAGGAAAATAGAGAATTTGGCAATACTAGTCAGGTTAATCGTCAAGACCAACCAAGGACTAACCAAGGGGGAGGACCTGCTCCTACTCTAGTCAAGGCTGAGGTACCATGGTCTGCCAGAAGGGGAACTCTCTCTGACAAGGATCGTGTCCTAAAGACTGTTAAAGGGATACTAAACAAGTTGACTCCTGAAAAATTTGATCTCCTGAAGGGTCAATTGATCGATTCTGGCATTACATCAGCTGACATATTGAAGGGAGTCATTTCATTGATATTTGATAAGGCAGTGCTGGAACCAACATTCTGCCCCATGTATGCTCAGCTGTGTTCTGATCTTAATGAGAAGCTGCCTTCATTCCCATCTGAAGAATCTGGTGGGAAAGAAATAACTTTTAAGAGATTACTCTTGGATAATTGCCAGGAAGCTTTTGAAGGTGCTGGCAAACTGAGGGAAGAATTGGCGCAGATGACTTCCCCTGAGCAGGAGACAGAGCGACGTGACAAGGATAGACTTGTCAAAATTCGCACCCTTGGAAACATCCGTTTAATTGGTGAGCTGCTGAAGCAAAAAATGGTTCCTGAAAGGATTGTCCATCACATTGTTCAGGAGCTTTTGGGAGCTGCTGACAGCAATGTGTGTCCGGCTGAGGAAAATGTTGAAGCCATATGTCATTTTTTCAACACTATTGGCAAGCAGCTTGATGAAAGCCCAAAATCACGACGTATAAATGATATGTACTTTGGCCGGTTGAAAGAATTGAGCACAAATCCTCAACTTGCACCACGGATGAAATTCATGGTTCGTGATGTTATTGATCTGCGTGCTAGTAACTGGGTTCCACGACGTGAAGAGATCAAGGCCAAAACCATCAGTGAAATCCATGATGAGGCAGAAAAGAATCTTGGATTGCGTCCAGGTGCCACTGCAGGTATGAGAAACACCCGTGTTACTGGTGTTCAAGGTAACACGGGAGCTGGGGGCTTCCCCATTGCCCGACCTGGTACAGGAGGTTTAATGCCTGGGATGCCGGGTGCAAGGAAGATGCCTGGGATGCCTGGTATTGATAATGATAACTGGGAGGTGCCTAGGACTAGATCTATGCCAAGAGGAGACATGTCTGGCGCTCAAACTGGAGGACGTGGACAATCTCCTTATCTTTCCAAGCCATCAGTCATAAACTCAAAGTTACTGCCTCAAGGCAGTAGTGGTCTTATAAGTGGGAAGAATAGTGCCCTGGTGCTTGGAGGTGGTACTCCTTCTGCTCTACCATCAAACATTGTTTCAGGTACAGAGCCTGCACCTCAAATCCCTTCACCTGTTAAACCTGTTTCTGCCGCATCCCCTGAGAAGCCACAGGCCCCAGCTGTAAAGTTGAATATTGACGATCTCCACCGCAAAACTGTCTCTCTTTTGGAAGAATATTTCAATGTTCGGCTTTTGGACGAGGCATTACAGTGTGTGGAGGAACTAAAAGCTCCGACTTATCACCCAGAGGTTGTGAAGGAAGCCATTTCCCTTGGACTAGATAAAAGTCCACCACGTGTTGAACCTGTTGCCAATCTTATTGAGTATCTGTTTACGAAGAAGATTCTCACAGCTAGAGACATAGGGACTGGATGTTTGTTATTTGCTTCTCTGCTGGATGATATTGGCATAGATTTACCCAAAGCACCAAATAACTTTGGTGAGATAATAGGGAAACTAGTTTTGTCCGCGGGTTTGGACTTTAAGGTGGTCAAAGAGATCCTTAAGAAGGTGGGTGACGACTACTTCCAGAAAGCAATATTCAACTCTGCAGTACAGGTAATTAGCTCTGCATCCGGGCAAGCTGTGTTGGATTCACAAGCATCTGATATTGAGGCCTGCCAAGCTCTGTTTGAGTGA 2340 0.456 MQQGDQTVLSLRPGGGRGNRLLAPRFDSSSSNSPAFGSFSSDLSHLRPNAGASSLLAFKVGDSQFESRERVRYTKEELLHIRETLEETPEDILKLRHDIDAELFGEDQSWGRVENNPPTQIQNRYSEPDNRDWRGRSAQPPANADERSWDNIKENREFGNTSQVNRQDQPRTNQGGGPAPTLVKAEVPWSARRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPSFPSEESGGKEITFKRLLLDNCQEAFEGAGKLREELAQMTSPEQETERRDKDRLVKIRTLGNIRLIGELLKQKMVPERIVHHIVQELLGAADSNVCPAEENVEAICHFFNTIGKQLDESPKSRRINDMYFGRLKELSTNPQLAPRMKFMVRDVIDLRASNWVPRREEIKAKTISEIHDEAEKNLGLRPGATAGMRNTRVTGVQGNTGAGGFPIARPGTGGLMPGMPGARKMPGMPGIDNDNWEVPRTRSMPRGDMSGAQTGGRGQSPYLSKPSVINSKLLPQGSSGLISGKNSALVLGGGTPSALPSNIVSGTEPAPQIPSPVKPVSAASPEKPQAPAVKLNIDDLHRKTVSLLEEYFNVRLLDEALQCVEELKAPTYHPEVVKEAISLGLDKSPPRVEPVANLIEYLFTKKILTARDIGTGCLLFASLLDDIGIDLPKAPNNFGEIIGKLVLSAGLDFKVVKEILKKVGDDYFQKAIFNSAVQVISSASGQAVLDSQASDIEACQALFE* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4842 779 Pfam MA3 domain 616 727 IPR003891 -
Mtr4g4842 779 MobiDBLite consensus disorder prediction 528 545 - -
Mtr4g4842 779 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 778 IPR045208 GO:0003743
Mtr4g4842 779 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 778 - -
Mtr4g4842 779 SUPERFAMILY ARM repeat 610 765 IPR016024 -
Mtr4g4842 779 MobiDBLite consensus disorder prediction 112 126 - -
Mtr4g4842 779 MobiDBLite consensus disorder prediction 155 176 - -
Mtr4g4842 779 SMART ma3_7 615 727 IPR003891 -
Mtr4g4842 779 Gene3D - 203 442 - -
Mtr4g4842 779 Gene3D - 608 773 - -
Mtr4g4842 779 MobiDBLite consensus disorder prediction 24 39 - -
Mtr4g4842 779 MobiDBLite consensus disorder prediction 509 545 - -
Mtr4g4842 779 SUPERFAMILY ARM repeat 197 432 IPR016024 -
Mtr4g4842 779 MobiDBLite consensus disorder prediction 108 182 - -
Mtr4g4842 779 Pfam MIF4G domain 203 429 IPR003890 GO:0003723|GO:0005515
Mtr4g4842 779 ProSiteProfiles MI domain profile. 614 736 IPR003891 -
Mtr4g4842 779 MobiDBLite consensus disorder prediction 1 39 - -
Mtr4g4842 779 SMART if4_15 203 429 IPR003890 GO:0003723|GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4842 Mtr-Chr4 62580544 62586803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4842 1 777 Eukaryotic Initiation Factors Gene Family AT5G57870 63.544 0.0 954
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4842 K03260 - gmx:100781275 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4842 4 62580544 62586803 Mtr4g4842 4 62580544 62586803 ECH