Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4839 ATGGAAGCCAGCGCCGGACTAGTCGCTGGTTCTCACAACCGGAACGAGCTTGTTGTCATTCATGGCCATGAAGAGCACAAGCCATTGAAGAACTTGGACGGTCAAGTGTGCGAGATATGTGGTGATGATGTTGGACTTACTGTGGATGGAGATTTGTTTGTGGCATGTAACGAGTGTGGTTTTCCGGTGTGCCGGCCTTGCTATGAGTATGAAAGAAGGGAGGGGAGACAACTTTGTCCTCAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCTCGGGTTGAGGGAGACGATGATGAGGAGGATGTGGACGATATTGAACATGAATTCAAAATTGAAGACAAAATGAACAATCATGATCATTCTGCTGAGGCCATGCTGCATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGATGAAAATGCACACTTCCCAGCTGTTATTGCTGGTGGTCGCTCTCGGAATGTGAGTGGTGAGTTCCCAATATCATCTCATAGTTATGGGGAGCAGATGCTATCTTCACTGCATAAAAGAGTGCATCCATATTCCGCTTCTGATTCTCGAAGTGCAGGGTGGGATGAAAGGAGAGAAGATGGATCATATGATAGAATGGATGACTGGAAATTGCAGCAAGGAAATTTGGGACCTGAACCTGATGAAGATCTAGATGCAAACATGTCAGATGAAGCAAGACAACCACTGTCAAGGAAGGTACCAATAGCATCTAGCAAAATCAATCCATATAGGATGGTGATCGTGGCACGGCTTGTTATTCTTGGCTTCTTCCTCCGATACAGACTTATGAATCCAGTACATGATGCAATGGGGCTATGGCTAACTTCAATTATATGTGAAATCTGGTTTGCTATATCATGGATCCTTGATCAGTTCCCCAAATGGTATCCTATTGATAGAGAAACATACCTTGACCGTCTTTCACTCAGGTATGAGCGTGAAGGCGAACCCAATATGCTTGCTCCTGTAGATGTGTTTGTTAGTACTGTGGATCCCTTGAAGGAACCTCCTCTGAATACAGCCAACACAGTTCTTTCAATCTTGGCAATGGACTACCCCATTGATAAGATATCATGCTACATTTCTGATGACGGAGCTTCAATGTGTACATTTGAAGCCCTGTCGGAAACGGCAGAGTTTGCTAGGAAGTGGGTACCATTTTGTAAGAAATTTTTGATAGAACCTCGTGCACCAGAGATGTACTTCTCTGAGAAAATTGACTATCTAAAGGACAAGGTGCAGCCAACTTTTGTCAAAGAACGTCGGTCCATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTGGCAAAAGCTCAGAAGGTTCCTGCAGGAGGGTGGATTATGCAGGATGGGACACCATGGCCAGGAAACAATACTAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGATAGTGAAGGAAACCAGCTTCCTCGCCTTGTTTATGTATCTAGAGAGAAAAGGCCAGGATTTCAACACCACAAGAAAGCCGGTGCCATGAATGCTCTGGTACGGGTCTCTGCAGTGCTTACAAATGCTCCTTTTATGCTGAACTTGGATTGTGATCATTATATCAATAACAGCAAGGCTGTCCGAGAGGCCATGTGCTTCTTGATGGACCCCCAAACAGGGAAGAAAGTCTGCTATGTCCAGTTTCCTCAAAGATTCGATGGCATTGATGCGCATGATCGATATGCTAATAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTGTATGTCGGCACAGGGTGTGTTTTTAGAAGGCAGGCTTTATATGGATATAATCCTCCTAAGGGTCCCAAGCGTCCAAAAATGGTAAGTTGTGATTGCTGCCCATGTTTTGGAAGGCGCAAGAAGGTTAAGCATGCAATGAACGACGCAAATGGAGAAGCTGCAGGCCTAAGAGGAATGGAAGATGACAAAGAGTTACTGATGTCCCAGATGAATTTTGAGAAGAAATTTGGGCAGTCATCGATTTTTGTGACTTCAGTCTTGATGGAAGAGGGTGGTGTACCTCCTTCGTCAAGTCCAGCAAGCCAACTTAAAGAAGCCATTCATGTAATCAGTTGCGGATATGAAGATAAAACTGAATGGGGGATTGAGCTTGGTTGGATTTATGGATCTATTACAGAGGATATTTTAACAGGCTTTAAGATGCATTGCCGTGGTTGGAGATCCATTTACTGTATGCCAAAGAGAGTAGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGACTCAACCAGGTGCTTCGTTGGGCTCTTGGCTCCATTGAGATCTTCTTCAGTCATCATTGCCCTTTATGGTATGGCCACAAGGAAGGGAAGCTGAAGTGGCTGGAGCGATTTGCCTATGCAAACACAACCGTGTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTATTCTTCCAGCTGTCTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACTTTTGCTAGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATGGCAACGGGCATTCTTGAGTTGAAATGGAGTGGAGTCAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGGCTTCTGAAAGTTCTTGCTGGAATTGACACAAACTTCACTGTTACATCCAAGGCAACAGATGATGAGGAATTTGGAGAATTGTACGCCATCAAGTGGACCACTCTCCTAATTCCTCCAACGACTATCTTAATAATCAATATTGTTGGGGTTGTTGCTGGAATCTCAGACGCCATAAACAATGGTTACCAATCATGGGGACCTCTATTTGGAAAACTCTTCTTTTCCTTCTGGGTGATTGTCCATCTATATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACCCCCACCATTGTTGTGATATGGTCAGTGTTGTTGGCTTCCATTTTCTCTTTGTTATGGGTAAGAATTGACCCATTCGTGATGAAAACTAAGGGACCTGATACCAAGCTATGCGGAATCAACTGTTAA 3117 0.4427 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGRQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFKIEDKMNNHDHSAEAMLHGKMSYGRGPEDDENAHFPAVIAGGRSRNVSGEFPISSHSYGEQMLSSLHKRVHPYSASDSRSAGWDERREDGSYDRMDDWKLQQGNLGPEPDEDLDANMSDEARQPLSRKVPIASSKINPYRMVIVARLVILGFFLRYRLMNPVHDAMGLWLTSIICEIWFAISWILDQFPKWYPIDRETYLDRLSLRYEREGEPNMLAPVDVFVSTVDPLKEPPLNTANTVLSILAMDYPIDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFLIEPRAPEMYFSEKIDYLKDKVQPTFVKERRSMKREYEEFKVRINALVAKAQKVPAGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDSEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDAHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGRRKKVKHAMNDANGEAAGLRGMEDDKELLMSQMNFEKKFGQSSIFVTSVLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRVAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGHKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFASLYFVALFSSIMATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEEFGELYAIKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKLCGINC* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4839 1038 Pfam Cellulose synthase 330 1032 IPR005150 GO:0016020|GO:0016760|GO:0030244
Mtr4g4839 1038 MobiDBLite consensus disorder prediction 180 199 - -
Mtr4g4839 1038 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Mtr4g4839 1038 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1038 - -
Mtr4g4839 1038 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Mtr4g4839 1038 SUPERFAMILY RING/U-box 21 107 - -
Mtr4g4839 1038 MobiDBLite consensus disorder prediction 205 232 - -
Mtr4g4839 1038 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Mtr4g4839 1038 Coils Coil 428 448 - -
Mtr4g4839 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Mtr4g4839 1038 SUPERFAMILY Nucleotide-diphospho-sugar transferases 344 839 IPR029044 -
Mtr4g4839 1038 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1038 - -
Mtr4g4839 1038 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 475 621 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4839 Mtr-Chr4 62557083 62562206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4839 1 1038 Cell Wall Biosynthesis AT5G17420 85.274 0.0 1830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4839 K10999 - gmx:100779834 1996.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4839 4 62557083 62562206 Mtr4g4839 4 62557083 62562206 ECH