Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4825 ATGGCGAAAAAATCGCAGAAGCAAATAGAGAAAGACGACAATGCAAGCAATGATAATGATAATCTGAATCCAAGTAACACTGTCACCACCAAAGCAAAACGGACGAGGAAAAGTGTCCCTAGAACTTCTCCACCTCAACGCAGCTCAATATACAGAGGAGTCACTAGGCACCGTTGGACAGGCCGATATGAAGCTCATTTGTGGGACAAGAATTGTTGGAATGAGTCTCAGAACAAGAAAGGGAGACAAGTCTACCTTGGTGCTTATGATAATGAGGAGACGGCAGCACATGCTTATGATCTAGCAGCATTGAAATATTGGGGTCAAGATACCATTATTAATTTTCCGCTATCAAACTATCAGAAAGAACTAATTGAAATGGAGAGTCAATCAAGGGAGGAGTATATTGGATCCTTAAGAAGGAAAAGCAGTGGTTTTTCACGGGGTGTATCTAAATACAGAGGTGTAGCAAGACATCATCATAACGGAAGGTGGGAGGCACGGATTGGCAAAGTTTTTGGCAATAAGTATCTTTATCTCGGAACATATGCTACCCAAGAAGAAGCAGCTACAGCTTATGACATGGCAGCTATTGAATACCGTGGACTTAATGCTGTTACCAATTTCGACCTAAGCCGTTATATTAAGTGGCTTAAGCCCAACAATAACAACAATGACGACAATAACAAGTCTAATATTAATCTTTGTGACATTAACTCTAACAGTAGTGCCAACGACTCAAACTCTAATGAAGAATTGGAATTTAGCCTCGTGGACAATGAAATATCACTCAATAATTCTATTGACGAAGCCACATTGGTTCAACCTCGACCAACTAGTGCCACGTCAGCCCTAGAGCTTTTGCTTCAATCATCTAAGTTTAAGGAAATGGTGGAAATGGCATCAATGACTTCCAATGTGTCAACGACGTTGGAGTCTGATCAATTGTCACAATGTGCATTTCCTGATGACATTCAAACGTACTTTGAATATGAAAATTTCAATGATACAATGTTGGAAGACCTCAACTCCATTATGCCTACGTTTCATTATGACTTTGAGGGTGCTGAGGTTTTATAG 1080 0.4019 MAKKSQKQIEKDDNASNDNDNLNPSNTVTTKAKRTRKSVPRTSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEETAAHAYDLAALKYWGQDTIINFPLSNYQKELIEMESQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNNNDDNNKSNINLCDINSNSSANDSNSNEELEFSLVDNEISLNNSIDEATLVQPRPTSATSALELLLQSSKFKEMVEMASMTSNVSTTLESDQLSQCAFPDDIQTYFEYENFNDTMLEDLNSIMPTFHYDFEGAEVL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4825 359 MobiDBLite consensus disorder prediction 18 33 - -
Mtr4g4825 359 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Mtr4g4825 359 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
Mtr4g4825 359 SMART rav1_2 50 122 IPR001471 GO:0003700|GO:0006355
Mtr4g4825 359 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
Mtr4g4825 359 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Mtr4g4825 359 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Mtr4g4825 359 SUPERFAMILY DNA-binding domain 49 118 IPR016177 GO:0003677
Mtr4g4825 359 Pfam AP2 domain 151 202 IPR001471 GO:0003700|GO:0006355
Mtr4g4825 359 Pfam AP2 domain 50 108 IPR001471 GO:0003700|GO:0006355
Mtr4g4825 359 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700|GO:0006355
Mtr4g4825 359 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Mtr4g4825 359 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 336 - -
Mtr4g4825 359 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 336 - -
Mtr4g4825 359 MobiDBLite consensus disorder prediction 1 49 - -
Mtr4g4825 359 MobiDBLite consensus disorder prediction 1 17 - -
Mtr4g4825 359 CDD AP2 49 118 IPR001471 GO:0003700|GO:0006355
Mtr4g4825 359 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Mtr4g4825 359 Gene3D AP2/ERF domain 50 118 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4825 Mtr-Chr4 62442702 62445601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4825 46 214 AP2-EREBP Transcription Factor Family AT5G57390 73.373 7.49e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mtr4g4825 AP2 4.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4825 K09285 - gmx:100793339 508.834