Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4813 ATGGCGATGGCTGCTGCACTCCGACGCGAAGGGAAGCGTTTGGCTCCTCTCATGTCTTCCCAACCACCAATCAACACCACTCTCCGATCTTCTCTCATCTCTCCCTTAGATCAATCTTCTATTGGAGGAGCGCGTTCTATTTCAACTCAAATTGTGAGAAATCGGATGAAGAGTGTGAAGAATATTCAGAAAATTACTAAGGCTATGAAGATGGTTGCTGCGTCTAAGCTACGTGCTGTTCAAACTAGGGCTGAAAATTCACGTGGTTTGTGGCAGCCATTTACGGCCCTTCTCGGCGATGCTACAAGCGTTGATGTCAAGAAGAATGTTGTAATTACCGTTTCTTCAGACAAAGGTCTTTGTGGTGGAATCAACTCAACGTCTGTCAAGATAAGCAGGGCCTTGAGCAAGTTGAATTCTGGACCTGATAAAGAGACAAAGTATGTCATATTGGGAGAGAAGGCTAAGGCTCAGTTGATTCGTGACTCAAAGAAAGACATTGCACTCAGCTTAACTGAGATACAAAAGAATCCTCTGAATTATACTCAGGTTTCTGTCTTGGCTGATGACATTCTAAAAAACGTGGAGTATGATGCACTGAGGATTGTTTTCAACAGATTTCAATCCGTTGTACAATTTCTACCAACGGTGTCAACTATACTATCCCCTGAGATTGTTGAAAGAGAGGCTGAAGCTGGAGGAAGTCTCGGTGAACTGGATTCGTATGAGATTGAAGGGGGTGACACAAAATCAGAAATTCTTCAGAATCTGACCGAGTTCCAGTTCTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCCTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGCTCTAGCAGGAATGCTGGGGATATGCTTGATCGTCTGACCCTCACTTATAATAGAACTCGTCAAGCATCAATTACCACTGAATTGATTGAGATTATCTCTGGAGCATCAGCGCTGACGGGTTAA 984 0.4431 MAMAAALRREGKRLAPLMSSQPPINTTLRSSLISPLDQSSIGGARSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVVITVSSDKGLCGGINSTSVKISRALSKLNSGPDKETKYVILGEKAKAQLIRDSKKDIALSLTEIQKNPLNYTQVSVLADDILKNVEYDALRIVFNRFQSVVQFLPTVSTILSPEIVEREAEAGGSLGELDSYEIEGGDTKSEILQNLTEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALTG* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4813 327 CDD F1-ATPase_gamma 48 322 IPR000131 GO:0015986|GO:0045261|GO:0046933
Mtr4g4813 327 Pfam ATP synthase 50 325 IPR000131 GO:0015986|GO:0045261|GO:0046933
Mtr4g4813 327 ProSitePatterns ATP synthase gamma subunit signature. 311 324 IPR023632 -
Mtr4g4813 327 Hamap ATP synthase gamma chain [atpG]. 46 325 IPR000131 GO:0015986|GO:0045261|GO:0046933
Mtr4g4813 327 Gene3D ATP synthase, gamma subunit, helix hairpin domain 52 322 - -
Mtr4g4813 327 PANTHER BNAA05G10580D PROTEIN 1 325 - -
Mtr4g4813 327 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 325 IPR035968 GO:0015986|GO:0045261|GO:0046933
Mtr4g4813 327 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 48 325 IPR000131 GO:0015986|GO:0045261|GO:0046933
Mtr4g4813 327 Gene3D - 72 284 - -
Mtr4g4813 327 PIRSF ATP_synthase_gamma 17 325 - -
Mtr4g4813 327 PANTHER ATP SYNTHASE GAMMA CHAIN 1 325 IPR000131 GO:0015986|GO:0045261|GO:0046933
Mtr4g4813 327 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986|GO:0045261|GO:0046933
Mtr4g4813 327 PRINTS ATP synthase gamma subunit signature 198 215 IPR000131 GO:0015986|GO:0045261|GO:0046933
Mtr4g4813 327 PRINTS ATP synthase gamma subunit signature 272 291 IPR000131 GO:0015986|GO:0045261|GO:0046933
Mtr4g4813 327 PRINTS ATP synthase gamma subunit signature 303 324 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4813 Mtr-Chr4 62273561 62278520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4813 13 325 Primary Pumps ATPases AT1G15700 28.219 2.24e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4813 K02136 - egt:105973487 535.028