Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4796 ATGGGTAGAAGTTTTGAGCCATTTCAAGGTGACAACACCTTTATGATTCCATCACCATTAGAACAACCACCATATTATTTTCAACCTCACCCACCATTTCCACCTATCACAGTTTCTACTCTAAGATCTAATAATAATAGTAATTTCAGTTTTAACAATAGCACCTTAAAGGTTAGTCCAGGTATTCTTATAATCATTACAATTTTAGCTATTGTTTTCTTCATTTCTGGTTTGCTTCATCTCTTAGTTAGATTTCTATGGAGACCTCAGAGTAGAGACCCTGATGAATTGGATGATGTTACTGCTCTTCAAGGGCAATTGCAACAGCTTTTTCATCTTCATGATGCTGGTGTTGACCAATCATTCATTGATACACTTCCTGTGTTTCTTTACAAAACTATTATAGGATTGAAAGTGAACCCTTTTGATTGTGCTGTTTGTTTGTGTGAATTTGAGCATGAAGATAAGCTTAGGTTGTTGCCAAAATGTAGCCATGCTTTTCATATGGAGTGTATTGATACATGGCTTTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCTAATTTGCTCCATGATTTCAACACAAACAATTGTGGTTCTCCTTTGGTTCTTGTTCTAGAATCTGGTAGTGATACTTCAAGGGAAATTGTTCCAGAAAGAGAGGCTGCAATTTCTACAGGTAGTGTTGTTGGTAGGACTAGTTCAGTTAGGACATCAAATTCTCATCTTGGTTGTTGCGGAGACGGTGAAATCGGAGGTGATTTGGCTTTGGTTGAAAACGTTCCTGATCCAAAAGTTGAAGTTGGAGGAGATGGTGTGGAGAAAGTTGTTACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGAGGGGAAGGAAGTAGCAGCAACAATGTGGATAACAGAAGGTGTTTTTCAATGGGATCATTTGCTTATATTATGGATGAAACTTCATCATTGCAGGTACCAATTAGAACTCCAATAAAGCAGCAATTGAGCAAGAAGAAGAAGAATGTTTTACCTTTGATTCCAGGTCATAGGATTGCAATGTCAGAATGTGATTGTGAATCTAGAAGAGATTTCAAATTTGCAAGCTTTGATTCAGCCAGAGCTGAGGATGTTGTTAAAGGTAGTACTAGTGAGGGTGCTGGTATTGGAAGGAGTAGAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTTAGAGGAAAAAAAGATAAGAAAAATGGTGATGTAACTGATTCATCTAGAAGAGCTGTTTCATTTAGGTTTCCATTACAAAGCAATGTTGGTAGTGGTAATGATGATTTGAAGGGTAAGAATGGCATGTTTCATACAAGGAGTACTGTTTCTGAGATGGATTTTGGAAAATGGGAAAATGGAGGAGGAAGTGAATTTAGTGGATATGATGAGGAAAATCAAAGCTGCTATAGTATGGATTCTCAAGCTAGAGCACCTTCATTTGCTAGAAGGACTTTGCTTTGGCTCACTGGAAAACAAAATAAGGTTGTTCATTCATCAACTACTTCAACCCTCTAG 1536 0.3743 MGRSFEPFQGDNTFMIPSPLEQPPYYFQPHPPFPPITVSTLRSNNNSNFSFNNSTLKVSPGILIIITILAIVFFISGLLHLLVRFLWRPQSRDPDELDDVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKTIIGLKVNPFDCAVCLCEFEHEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRANLLHDFNTNNCGSPLVLVLESGSDTSREIVPEREAAISTGSVVGRTSSVRTSNSHLGCCGDGEIGGDLALVENVPDPKVEVGGDGVEKVVTVKLGKYRNVDGGGEGSSSNNVDNRRCFSMGSFAYIMDETSSLQVPIRTPIKQQLSKKKKNVLPLIPGHRIAMSECDCESRRDFKFASFDSARAEDVVKGSTSEGAGIGRSRKESFSISKIWLRGKKDKKNGDVTDSSRRAVSFRFPLQSNVGSGNDDLKGKNGMFHTRSTVSEMDFGKWENGGGSEFSGYDEENQSCYSMDSQARAPSFARRTLLWLTGKQNKVVHSSTTSTL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4796 511 Pfam Ring finger domain 143 186 IPR001841 -
Mtr4g4796 511 SMART ring_2 144 185 IPR001841 -
Mtr4g4796 511 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Mtr4g4796 511 SUPERFAMILY RING/U-box 138 204 - -
Mtr4g4796 511 CDD RING-H2_PA-TM-RING 143 186 - -
Mtr4g4796 511 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 15 429 - -
Mtr4g4796 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 191 IPR013083 -
Mtr4g4796 511 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 15 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4796 Mtr-Chr4 62077369 62079567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4796 47 509 C3H Transcription Factor Family AT2G18650 45.756 2.03e-105 320
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4796 4 62077369 62079567 Mtr4g4796 4 62077369 62079567 ECH