Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4795 ATGCCTCCTCATCATCACCATGGCGATCCTGAACAACCAAAACCAAACCCTAATCTCCTCTCCCTATTCCTCAAACCCATCATCATGCTTCTTCTCACATCCCTCTTCTTCCTCTTCCTCGGTTTCGCCGCCTTTCTCCTCCTCAACCTCTTCCTCTTAGCCGGTGCTCTCCACCGTCTCCGTTTCCGTCCTACTCCAACTCGACGTCTTCAATCTCTCACCGACGCTTTCCTCCCTCGCGAAATCAACAACCTCCCCAACTTCCGGATAACCAAAGGATCCGTTTCCGAACCCGATTCTCGTTGTGCTGTTTGTTTGGATGGTTTTCGTAATGGTCAATGGTGTCGAAATCTCGCTGCTTGTGGTCATGTTTTTCATCGGAGATGTATTGATACGTGGCTTCTTAAGGTTGCCACGTGTCCTACTTGCCGTACACCGGTTCGGTCTAACCCTCAAACTTCTCAAGGTTCGGTTGTAGAACAAGATGAAGAAGGTTCTTCACGATTTTGGAATTGCTCTAATAACAACAATGGTTTCACCCTTTTGTAA 549 0.4791 MPPHHHHGDPEQPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAGALHRLRFRPTPTRRLQSLTDAFLPREINNLPNFRITKGSVSEPDSRCAVCLDGFRNGQWCRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSNPQTSQGSVVEQDEEGSSRFWNCSNNNNGFTLL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4795 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 4 173 - -
Mtr4g4795 182 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Mtr4g4795 182 PANTHER RING-H2 FINGER PROTEIN ATL56 4 173 - -
Mtr4g4795 182 SMART ring_2 102 143 IPR001841 -
Mtr4g4795 182 Pfam Ring finger domain 101 144 IPR001841 -
Mtr4g4795 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 154 IPR013083 -
Mtr4g4795 182 SUPERFAMILY RING/U-box 82 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4795 Mtr-Chr4 62066281 62067258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4795 14 155 C3H Transcription Factor Family AT2G18670 43.151 2.06e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4795 - - pvu:PHAVU_003G150700g 176.792