LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g4792	ATGCTTTCAAGATCTTGTTTAGGTTTATTAAACCATCAAATAACAACAATGAACAATTACGAACAAGAAGACCTAAACATAGTTCCAGAACTCATGACACCGTTCCAGAAGTTTCAACGACAATATTCCAACGTTTCAGTTCCTTCATCTCCGATTTCTCGTAAACGAAGAATGATAATAGTATCAAATCAGTTACCAATACGCGTTGTTTCATCTTCTTCTTGTGACTTGAAATTCGAATGGGACGTTGATAGCATATATTTTCAGCTCAAAGACGGTATTTCCTCTGATTCTGAACTCTTTTACGTTGGTTCGTTAAAATCACATATTGAAATTGAACCATCACAGCAAGAAGAAGTTGCCAAAGTCTTGTTAGAAAAGTTTCGCTGTGTTCCAACTTTTCTACCTTCTGAAACTCACAACTATTTTTACCATGGTTTTTGTAAGCATTATCTTTGGCCTTTGTTTCACTACATGCTACCTCTGTCCAAGAGTCAAGGTGTGCGTTTCAATTCCTCTCATTGGCTTTCATACAAAAAGGCCAATAGAATCTTCGCGGACAAGGTTCGCGAGGTTTTGAATCCTGATGAAGATTATGTCTGGGTTCATGATTATCATCTAATGGTTTTACCAACTTACTTGAGGAAACGTTTTCCTAAAGTCAAATTGGGTTTTTTTCTTCACAACACGTTTCCTACTTCAGAAATCTATAGAACAATACCTGTTCGTGAAGAAATTCTTAGGGGTTTGTTGAACTGTGATTTGATTGGATTTCATACTTTTGATTATGCTAGACATTTTCTGTCTTGTTGTAGTAGGATGTTGGGTTTGGATTATGAGTCTAAAAGAGGTTACATTGGTGTTGATTACTTTGGAAGAAATGTTACCATCAAGATTCTTCCTGTGGGGATCCACATGGGTCTTCTCGAATTGGTTTTGTCGTCCTCTGAAACAGCTAAGAGGGTGAAAGAGTTGAAGGAAGAATTTGAAGGGAAGGTTTTGATTTTGGGGGTTGATGACTTGGATTTGTTCAAAGGTATTGGGTTGAAGTTTCTGGCATTGAGGAATCTTTTGGAGGGAAATGAAAAATTAAGGGGTGAAGTTGTGTTGGTTCAGATTCTGAATCAAGCAAGGAGTAGCGGAAAAGATATACAGGATGTGAAGTTTGAGATTGAAGCTATTGCCAAAGAAGTTAATGACAAATATGGTGATGAACAATCTGGGTATAGGCCAATTGTTTGTATAAATGGTCCGGTTTCGACTCAGGAGAAGGCTGCTTACTATGCTATATCAGAGTGTTGTATTGTGAATGCTGTGAGGGATGGGATGAATTTGATTCCTTACGAGTATACTGTTTGTAGACAAGGAAGTGTTGAATTGGACAAAACACTTGGAGTGGGAAATGATGAGCCTAAAAATAGTGTTATCATTGTTTCTGAGTTCATTGGTTGTTCGCCTTCACTCAGCGGGGCAGTTCGGGTGAATCCGTGGAACATTGATGATGTTTCAGAGAAAATGAACTCAGCAATCAAAATGAAGGATTCCGAGAAGCAATTGCGGCACAAGAAGAATTATAAGTACATAAGCTCTCATGATGTAGCGTATTGGGCCAAGAGTTTTGATCAGGATTTAGAGAGAGCTTGTAGGGAGCATTATCTCAAGACATATGTGGGATTAGGACTTGATAATTTTAGAATCATTGCTTTGGATCCTAGTTTTAAGAAGCTTTGTCTTGATGACATTGCCCCTGCTTACAAAGATACCAAAAGTAGGTTGATCCTTTTGGACTATGATGGCACCATGATGCCTCAGGGATCAATTAACAAAGCTCCTAGTTTGGATGTTATCTCTCTCTTGAATTCCTTATGCAGTGATCCCAAAAATACAGTGTTCATTGTTAGTGGCAGGGGAAGAGTTTGCCTTAGCGACTGGTTTTCTCCATGTGACAAATTGGGTCTCTCTGCAGAACATGGTTACTTCACAAGGTGGAGTAAGGATTCTCCTTGGACGACTCTCGGATTGGCATCAGATTTTGATTGGAAAATTAATGTAGAAAAGGTGATGGCGCTTTACACAGAAGCGACTGATGGTTCCTTCATTGAAGAAAAAGAAAGTGCAATGGTTTGGCAACATCAAGAAGCAGATCCTGATTTTGGACTGTGGCAAGCTAAAGAGCTTCTTGTTCACCTTGAGAGTATGCTGGCCAATGATCCTGTAGTAGTTAAAAGGGGACAACATATTGTTGAAGTAAAGCCTCAGGGTGTGAGCAAAGGTAAAGTGGTGGAAGAGCTTATATCAACCATGAGGAATGAGGAGAAGTCACCAGATTTTCTTCTATGTCTAGGAGATGATCGTTCAGATGAAGATATGTTTGAAAGCATTGCAAATTTAGCCTTACCAACCTCATCACAAGTGTTTGCATGCACTATTGGTTATAAACCAAGTAGGGCTAAATACTATTTGGATGATACTGGTCACGTTATCAGACTGCTGGAAGGACTTGCTGCTGCATCAGCGCAAAATTTAAGCACAAAATAG	2538	0.3905	MLSRSCLGLLNHQITTMNNYEQEDLNIVPELMTPFQKFQRQYSNVSVPSSPISRKRRMIIVSNQLPIRVVSSSSCDLKFEWDVDSIYFQLKDGISSDSELFYVGSLKSHIEIEPSQQEEVAKVLLEKFRCVPTFLPSETHNYFYHGFCKHYLWPLFHYMLPLSKSQGVRFNSSHWLSYKKANRIFADKVREVLNPDEDYVWVHDYHLMVLPTYLRKRFPKVKLGFFLHNTFPTSEIYRTIPVREEILRGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGVDYFGRNVTIKILPVGIHMGLLELVLSSSETAKRVKELKEEFEGKVLILGVDDLDLFKGIGLKFLALRNLLEGNEKLRGEVVLVQILNQARSSGKDIQDVKFEIEAIAKEVNDKYGDEQSGYRPIVCINGPVSTQEKAAYYAISECCIVNAVRDGMNLIPYEYTVCRQGSVELDKTLGVGNDEPKNSVIIVSEFIGCSPSLSGAVRVNPWNIDDVSEKMNSAIKMKDSEKQLRHKKNYKYISSHDVAYWAKSFDQDLERACREHYLKTYVGLGLDNFRIIALDPSFKKLCLDDIAPAYKDTKSRLILLDYDGTMMPQGSINKAPSLDVISLLNSLCSDPKNTVFIVSGRGRVCLSDWFSPCDKLGLSAEHGYFTRWSKDSPWTTLGLASDFDWKINVEKVMALYTEATDGSFIEEKESAMVWQHQEADPDFGLWQAKELLVHLESMLANDPVVVKRGQHIVEVKPQGVSKGKVVEELISTMRNEEKSPDFLLCLGDDRSDEDMFESIANLALPTSSQVFACTIGYKPSRAKYYLDDTGHVIRLLEGLAAASAQNLSTK*	846

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g4792	845	Pfam	Glycosyltransferase family 20	57	545	IPR001830	GO:0003824\|GO:0005992
	Mtr4g4792	845	CDD	HAD_TPP	592	824	-	-
	Mtr4g4792	845	CDD	GT20_TPS	57	545	IPR001830	GO:0003824\|GO:0005992
	Mtr4g4792	845	SUPERFAMILY	HAD-like	591	835	IPR036412	-
	Mtr4g4792	845	Pfam	Trehalose-phosphatase	594	823	IPR003337	GO:0003824\|GO:0005992
	Mtr4g4792	845	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	592	793	IPR006379	-
	Mtr4g4792	845	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED	1	840	-	-
	Mtr4g4792	845	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	840	IPR001830	GO:0003824\|GO:0005992
	Mtr4g4792	845	Gene3D	-	590	705	IPR023214	-
	Mtr4g4792	845	Gene3D	-	721	844	IPR023214	-
	Mtr4g4792	845	Gene3D	Glycogen Phosphorylase B;	311	529	-	-
	Mtr4g4792	845	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	57	549	-	-
	Mtr4g4792	845	Gene3D	Glycogen Phosphorylase B;	50	310	-	-
	Mtr4g4792	845	TIGRFAM	T6PP: trehalose-phosphatase	589	834	IPR003337	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g4792	Mtr-Chr4	62019363	62022747	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g4792	14	838	Trehalose Biosynthesis Gene Families	AT2G18700	63.779	0.0	1102

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g4792	K16055		-	gmx:100810498	1238.79