Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4779 ATGGAACTTCCTTCCTCTTCTACAATACTAATTGGACTCTCTTTGGACCCAAATGATAGCAAGGAACTTCTATCATGGGCATGGGCAATAAGAGTTTTAGCTAATCCAAATGATACCATTGTTGCTGTGCATGTTCTTGTAGCAGAGAATATGAAGAAACGTGTATCAGTGAGAAGAAGACAATCACAACTTAGGCAAGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACTTGTTGGTCCAAACAGGTTAATTTGGAGGCAAAAGTGGCATTGAGTTCCACAGTAGGTGGTGGTTTAGTGGAGGAAGCCAAGTCAATTTCTGCTGATTTTCTTCTTCTTCTTGGCGGAACAAGAAACAAAACAATTAAAATTGGCACCTCTAAAGGAATTACCAATTATTGCTTTGAGCATGTGCATGAAGGCTGCACAATTGTCTCAGTTGGAAGGAACACAAAAACAGAACAGAATATCAATTCAACAGATTTTCAAGAAATGAATCAACAGAACAGTTCACCTAGAACAGTACTTCTAGATGGACTACTAGAGGGACAATCCAACAGCACAGAAGATGACACATTTAGCACTAGAGCATCAAGCTTGACATATACACCTTCATCTGGTCCTAAGATTAAGAGAAAATCACAATTATCATTCAGGTTCATAATATCGTTTCTTGGTTCACCATTCAGAATAAAAACCTTCAACATGTCCAAAATTGAAAAACATCAACCCTTGTTGAATTGCTTCAGCTATGAAAATATATCAAATGCTACTAATGACTTTCACCAAGATAATTTAGTTGGAAGAGGAGGGTACTCAGAAGTATACAAAGGTGATCTTTGTAATGGAGAAACCATTGCTGTGAAGAGATTAGCCAAAGACAACAAAGATCCAAACAAGGAAAAAGAATTCCTTATGGAGTTGGGTATTATTGGACATGTTTGTCATCCTAATACTGCATCTTTATTGGGCTACTGCTTTGAAAATGGGCTTTATCTGATTTTCAATTACTCTCAAAATGGAAACTTGTCAACTGCATTGCATGGTTATGGTAAAGCAGGAAATTCACTTGACTGGCCAATAAGATACAAAATAGCTATTGGAGTTGCAAGGGGACTCCATTATCTTCATAAATGTTGCAAACACAGAATAATTCATCGTGACATTAAAGCCTCCAATGTTCTTCTTGGTCCTGATTATGAACCACAGATTACTGATTTTGGACTAGCAAAGTGGCTTCCTAACAAATGGACTCACCATGCTGTAATCCCTGTTGAGGGAACATTTGGATATTTAGCACCAGAGGTCTTTATGCATGGTATTGTGGATGAGAAAACTGATATATTTGCATTTGGTGTTCTTCTTCTTGAGATTGTAACTGGAAGAAGACCTGTTGATTCATCAAAGCAAAACATTCTCCTATGGGCTAAGCCTCTGATGGAATCAGGGAATATTGCTGAGCTGGCAGATCCAAGAATGGAAGGTAGATATGATGTAGAGCAACTGTATAGGGTAGTCCTAACAGCTTCATATTGTGTTAGACAAACTGCCATTTGGCGTCCCGCAATGACCGAGGTGTTAGAGCTGCTAACCAATGGACAAGACTATGAAGTTGGAAAGAGTTGGAGAATCCCAAAGTTCACTTCTGATGAATTGGATGATTACTCTATGATTTTTGGGTATGATGTCCCCTCAGACATATCTCTAGAGGATTATTTGTGA 1734 0.3829 MELPSSSTILIGLSLDPNDSKELLSWAWAIRVLANPNDTIVAVHVLVAENMKKRVSVRRRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEAKVALSSTVGGGLVEEAKSISADFLLLLGGTRNKTIKIGTSKGITNYCFEHVHEGCTIVSVGRNTKTEQNINSTDFQEMNQQNSSPRTVLLDGLLEGQSNSTEDDTFSTRASSLTYTPSSGPKIKRKSQLSFRFIISFLGSPFRIKTFNMSKIEKHQPLLNCFSYENISNATNDFHQDNLVGRGGYSEVYKGDLCNGETIAVKRLAKDNKDPNKEKEFLMELGIIGHVCHPNTASLLGYCFENGLYLIFNYSQNGNLSTALHGYGKAGNSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEVFMHGIVDEKTDIFAFGVLLLEIVTGRRPVDSSKQNILLWAKPLMESGNIAELADPRMEGRYDVEQLYRVVLTASYCVRQTAIWRPAMTEVLELLTNGQDYEVGKSWRIPKFTSDELDDYSMIFGYDVPSDISLEDYL* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4779 577 ProSiteProfiles Protein kinase domain profile. 265 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g4779 577 PANTHER OS08G0249100 PROTEIN 7 567 - -
Mtr4g4779 577 Pfam Protein kinase domain 265 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g4779 577 SMART serkin_6 265 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g4779 577 SUPERFAMILY Protein kinase-like (PK-like) 240 534 IPR011009 -
Mtr4g4779 577 Gene3D Transferase(Phosphotransferase) domain 1 343 546 - -
Mtr4g4779 577 CDD USP_Like 8 143 - -
Mtr4g4779 577 Gene3D Phosphorylase Kinase; domain 1 231 341 - -
Mtr4g4779 577 PANTHER OS08G0249100 PROTEIN 7 567 - -
Mtr4g4779 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Mtr4g4779 577 MobiDBLite consensus disorder prediction 188 210 - -
Mtr4g4779 577 Gene3D HUPs 4 151 IPR014729 -
Mtr4g4779 577 ProSitePatterns Protein kinases ATP-binding region signature. 271 293 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4779 Mtr-Chr4 61841942 61845719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4779 253 573 Trihelix Transcription Factor Family AT1G70460 38.643 3.24e-71 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Mtr4g4779 Pkinase 4.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4779 - - ccaj:109809416 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4779 4 61841942 61845719 Mtr4g4779 4 61841942 61845719 ECH