Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4778 ATGGGTATTGAAAGAGGAGGACTAAAGAGTCTTCGTGGCGGCTGGAGTGTGCCACCTAAGCTATGTGATTCTTGCAAGCTTACTCCCGCCGCGCTTTTTTGCCGTTCTGATTCTGCGTTTCTATGCATCAACTGTGATTCCACCATTCACTCTGCTAACAAACTCTCTTCCCGCCACGAGCGTGTCTGGATGTGCGAAGTCTGCGAACAAGCACCAGCTTCCGTCACGTGCAAAGCTGACGCCGCCGCTCTCTGCGTCACGTGCGATTCCGACATCCACTCTGCCAATCCACTCGCTCGCCGTCACGAACGTGTCCCCGTTGAACCTTTCTTTGATTCCGCTGAATCCGTAGTCAAATCCTCCTCCGCCGCCGCCGCAGCAGCTGCGTCTTTCAATTTCGTTGTTCCTACTGACGACGGTTACGGTCAAGATGATGCTGAAGCAGCTGCGTGGCTTATTCCGAATCCTAATTTTGGATCAAAACTCAATGAAACTCAAGATATCAAAACTAGAGAGATGTTTTTCTCTGATATGGATCCGTTTCTCGATTTTGATTACTCAAACAACTTCCAGAACAATAACTGCAGCAACGCGATGAACGATAGCGTTGTTCCTGTTCAAACTAAACCTACTCCGGCGCCGATGATGAATCACAACTCAGAAGGTTGCTTTGACATTGATTTTTGCAGATCGAAGCTATCTTCCTTTAACTATCCATCACATTCGATTAGCCATAGCCAGGTTTCGTCATCTTCACTTGACGTTGGAGTGGTGCCAGACGGAAACACAGTGTCAGAGATATCATACAATTTCGGATCGGAATCGATGGTTTCAGGGGGTGTGAATAGTAGTAACCAAGGGGTGCAAGGAGCAACACAATTATGTGGAATGGATCGTGAAGCGAGGGTTATGAGGTACAGAGAGAAAAGGAAGAACCGAAAATTCGAGAAGACTATTCGTTACGCTTCACGAAAAGCTTATGCAGAAACCCGGCCTAGAATTAAAGGCCGGTTCGCTAAACGAACCGAAATTGACTCGGATGTGGACCGTCTCTATAACCCTGCTGATCCTCTCTCAGTTCCTTCATCTATGCTAATGGACTGTCCATACGGCGTCGTTCCCACGTTTTAG 1131 0.4775 MGIERGGLKSLRGGWSVPPKLCDSCKLTPAALFCRSDSAFLCINCDSTIHSANKLSSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESVVKSSSAAAAAAASFNFVVPTDDGYGQDDAEAAAWLIPNPNFGSKLNETQDIKTREMFFSDMDPFLDFDYSNNFQNNNCSNAMNDSVVPVQTKPTPAPMMNHNSEGCFDIDFCRSKLSSFNYPSHSISHSQVSSSSLDVGVVPDGNTVSEISYNFGSESMVSGGVNSSNQGVQGATQLCGMDREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYNPADPLSVPSSMLMDCPYGVVPTF* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4778 376 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Mtr4g4778 376 Pfam CCT motif 299 341 IPR010402 GO:0005515
Mtr4g4778 376 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 376 IPR045281 GO:0009909
Mtr4g4778 376 ProSiteProfiles CCT domain profile. 299 341 IPR010402 GO:0005515
Mtr4g4778 376 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 8 376 - -
Mtr4g4778 376 CDD Bbox1_BBX-like 65 107 - -
Mtr4g4778 376 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Mtr4g4778 376 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
Mtr4g4778 376 SMART bboxneu5 17 64 IPR000315 GO:0008270
Mtr4g4778 376 SMART bboxneu5 65 107 IPR000315 GO:0008270
Mtr4g4778 376 CDD Bbox1_BBX-like 21 64 - -
Mtr4g4778 376 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4778 Mtr-Chr4 61826367 61828384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4778 1 376 C2C2-CO-like Transcription Factor Family AT5G57660 53.906 3.66e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mtr4g4778 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4778 - - cam:101510742 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4778 4 61826367 61828384 Mtr4g4778 4 61826367 61828384 ECH