Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4768 ATGGGTAGAGCTCCATGCTGTGACAAGGCTAACGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTACACTCAAATCTTACATTGAAACAAATGGAACTGGAGGAAATTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTTTACATAAGCATTGGAAGCAGGTGGTCCATTATTGCTGCTCAGTTACCTGGAAGAACAGACAATGACATAAAAAACTATTGGAACACAAGATTGAAGAAGAAATTACTCGGAAAGCGAAAACAGTCGAATATAAACAACTGCTTGATGAACCAAAAGGACACAAATGGAATAGATGAGAATTCTTATTCAAATTCATTAAGTAGCTCAGCTCTTGAGAGACTTCAACTTCATATGCAACTTCAAAGCCTTCAAAACCCTTTGTCTTTTTACAATAATAACCCTGCTGCACTAGTTTGGCCAAAGTTGCATCCTTCTCAAGAAAAAATGATCCAAATTAGCCTTCAAAACTCTAATAACAACCCTATGATGCAAAATGCTTTCTCTTCACCACAGGTTGATCTTTTGGAGAATATTATTCCTTTGGAGAATAATAATAACAATTCAGTTACCTTCAATGCTTCTGGAAATAGTAGTAATAATAATAATTCAATCATGCATTCAAGTGTTGCACCAAGAGGAGAAGCTGTTGAGAAGAGTACTAACAATGAAGGAATTCAGGAACTGGAAAGTGAACTAGATGAAATTCTCAACAACAGAAATATAATTACTATGGAAGATGAATATCGTGTGGCTGAATTTGATTGTTTCAGAGATATGAATAATAATGGTTCAAAGGATCAAAACTTGATATGGTGGTCAAATGATTCAGGTGATACTAAATCAGGATCCTCAAACTCATGGGATTCAACAACTAATCTTATGCAAGAAGGGATGTTCCAAGATTATGAACTAGGTTATGGTCTGTAG 1053 0.3618 MGRAPCCDKANVKKGPWSPEEDATLKSYIETNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKRKQSNINNCLMNQKDTNGIDENSYSNSLSSSALERLQLHMQLQSLQNPLSFYNNNPAALVWPKLHPSQEKMIQISLQNSNNNPMMQNAFSSPQVDLLENIIPLENNNNNSVTFNASGNSSNNNNSIMHSSVAPRGEAVEKSTNNEGIQELESELDEILNNRNIITMEDEYRVAEFDCFRDMNNNGSKDQNLIWWSNDSGDTKSGSSNSWDSTTNLMQEGMFQDYELGYGL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4768 350 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mtr4g4768 350 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mtr4g4768 350 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mtr4g4768 350 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr4g4768 350 PANTHER OS09G0431300 PROTEIN 1 308 - -
Mtr4g4768 350 CDD SANT 71 111 IPR001005 -
Mtr4g4768 350 CDD SANT 16 62 IPR001005 -
Mtr4g4768 350 MobiDBLite consensus disorder prediction 231 250 - -
Mtr4g4768 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Mtr4g4768 350 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mtr4g4768 350 MobiDBLite consensus disorder prediction 231 264 - -
Mtr4g4768 350 SMART sant 67 115 IPR001005 -
Mtr4g4768 350 SMART sant 13 64 IPR001005 -
Mtr4g4768 350 Gene3D - 7 68 - -
Mtr4g4768 350 PANTHER OS09G0431300 PROTEIN 1 308 - -
Mtr4g4768 350 Coils Coil 260 287 - -
Mtr4g4768 350 Gene3D - 70 143 - -
Mtr4g4768 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4768 Mtr-Chr4 61727059 61728807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4768 1 209 MYB Transcription Factor Family AT5G57620 69.668 1.22e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g4768 Myb_DNA-binding 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4768 K09422 - gmx:778083 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4768 4 61727059 61728807 Mtr4g4768 4 61727059 61728807 ECH