Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4738 ATGCATGCGAATCAGTTCGACGGCAACGCCGCCTTCGCCGGCGGCGGTTTCATGCCTTCTCAGACCAATCAAGGCGGTGAATCCTCTCTCACTCCCTCCAAGAATCGCGAAAGTCAAACTTTGCTTCCGCTGACGATCAAGCAGATCAACCATGCTCTTCAATCAAGTGATGATAGAACCGGTCTTACTATTGACGGTGTTGGCGTTAACACCGTTACTCTTGTTGGTAGGGTTTGCAACAAATCTGGACAGATTACTGAATTTAAGTTTGTACTTGACGATGGCACCGGAACGATTGAGTGTACTAAATGGCTTCACGAACCTGCTGATGCAATGGCAGTGGAGAGTATCTTGAATGGAATGTATGTGCGGTTATATGGACAGTTGAAAGGTTTTCAGGGTAAAACCTTAAGTATTTTCTCTCTCAGGCCCGTTACTGACTTCAATGAGATCGCCTCCCATTTCATTGAGTGCATTTATGTTCATCTATACAATTCGAGGTTACAGTATACCCAGGCTAGCATCCCCAGTCAGCAACATGCTCCCAATTCCATACAAATCACTCCCACAAAAGGTTATCAAGCTCAAGCCATTCCACCAAATCAATTCTCCGGTCAGCATAATAATGGTCAGAAGAGTGTTCAAGAGTTGGTGTTAGAATATTTGGCTCTTCCCACAATCAGGGAATTGGAGGGGGGAGTCTTTTGTGGAACTATTGCAAAGCAACTTGGAGTTTCTTTGGATAATGACGTCATACCTGCTCTTGATCTTCTTAGTGGAGAAGGTGTCATTTATGAAGGTCTACCAAAGCACTATAAGATATGTTCCGACGGTTGA 837 0.4456 MHANQFDGNAAFAGGGFMPSQTNQGGESSLTPSKNRESQTLLPLTIKQINHALQSSDDRTGLTIDGVGVNTVTLVGRVCNKSGQITEFKFVLDDGTGTIECTKWLHEPADAMAVESILNGMYVRLYGQLKGFQGKTLSIFSLRPVTDFNEIASHFIECIYVHLYNSRLQYTQASIPSQQHAPNSIQITPTKGYQAQAIPPNQFSGQHNNGQKSVQELVLEYLALPTIRELEGGVFCGTIAKQLGVSLDNDVIPALDLLSGEGVIYEGLPKHYKICSDG* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4738 278 PANTHER REPLICATION PROTEIN A-RELATED 6 276 IPR040260 -
Mtr4g4738 278 MobiDBLite consensus disorder prediction 16 37 - -
Mtr4g4738 278 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A-LIKE 6 276 - -
Mtr4g4738 278 CDD RPA2_DBD_D 71 163 - -
Mtr4g4738 278 PIRSF RPA32 1 275 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr4g4738 278 Pfam Replication protein A C terminal 162 266 IPR014892 -
Mtr4g4738 278 Pfam OB-fold nucleic acid binding domain 72 139 IPR004365 GO:0003676
Mtr4g4738 278 Gene3D - 33 167 IPR012340 -
Mtr4g4738 278 SUPERFAMILY Nucleic acid-binding proteins 41 166 IPR012340 -
Mtr4g4738 278 MobiDBLite consensus disorder prediction 12 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4738 Mtr-Chr4 61390036 61394272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4738 1 225 Core DNA Replication Machinery Family AT3G02920 47.162 7.34e-70 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4738 K10739 - gmx:100782819 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4738 4 61390036 61394272 Mtr4g4738 4 61390036 61394272 ECH