Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4695 ATGGGGACCAAGGCAAAGAAAGCCATGCACAAGAGTTTGAAAAGGATCAATGCTAAACCATCGCATTCTCAACCTGCTGCTGATTTTTTGCCGTTGGATTGTGGTCCTGGCCGTAAACTTCCTGAACTTAAACCCCTGGAAAATACTTCCCCTGTTTTATACATTGGTCGCATTCCACACGGGTTCTATGAGACCGAGATGGAGGCTTATTTTGGACAATTCGGTACCGTCAAGAGATTGAGAATTGCCAGGAATAAAAAGACTGGAAAATCAAGACATTTTGGCTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTTGCTGATACTATGCACAATTATTTGCTCTTTGAACACCTTCTTCAGGTTTTCGTCGTAGCTTCAGAAGATGTTCATCCCAATTTATGGAGAGGATTCAATTATCGTTGCAAGCCTCTGGACTCTCTCCAAATTGAACGGGAACGACATGACAAGGAAAGAACATTGGAAGAACACAAAAAGTTGGTTGACAGGGTTATGAAACGTGACAAAAAAGTCGGAAAATGA 549 0.4135 MGTKAKKAMHKSLKRINAKPSHSQPAADFLPLDCGPGRKLPELKPLENTSPVLYIGRIPHGFYETEMEAYFGQFGTVKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVFVVASEDVHPNLWRGFNYRCKPLDSLQIERERHDKERTLEEHKKLVDRVMKRDKKVGK* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4695 182 CDD RRM_NIFK_like 52 124 - -
Mtr4g4695 182 SUPERFAMILY RNA-binding domain, RBD 31 136 IPR035979 GO:0003676
Mtr4g4695 182 SMART rrm1_1 52 125 IPR000504 GO:0003723
Mtr4g4695 182 Coils Coil 152 172 - -
Mtr4g4695 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Mtr4g4695 182 PANTHER - 1 180 - -
Mtr4g4695 182 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 180 - -
Mtr4g4695 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 120 IPR000504 GO:0003723
Mtr4g4695 182 Gene3D - 3 125 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4695 Mtr-Chr4 60978244 60980896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4695 53 124 Eukaryotic Initiation Factors Gene Family AT1G71770 30.556 4.61e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4695 K14838 - gmx:100778780 271.552