Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4686 ATGGATATGGTTAACCAAAGAAAGAAGAACATGGGACGCAAGAAGATTGAGATCAAGAAGGTTGAGAAAGAATCACAGAAACAAGTGACTTTCTCAAAAAGAAGACAAGGTTTATTCAGAAAAGCAAGCGAACTTTGTGTCTTATGTGATGTTCATGCAGCCATCATTGTGTTTTCTCCTGGTGACAAACTATTTTGTTTTGGCCAACCCGACACATACTCTGTCCTCAACAGCTACATCAAAGGAACCACTGAGTTTGAGGATTCAAAGGTAGCAGAAAATTTTCTGACCTACCAAGATTACAATAGACAATATGTGGAGGCACAAAAGATGTTGGAGATGGAAAAGAAGAAACTAGAAGATGTTCAAAATTTGGCTAAGATTTTCAACAAGGGTGGTGATTGGTGGAATGATTCAATTGATGATATGAGGTGGAATGATTCAATTGATGATATGAGTAGTGATCAACTTGAACAATTTATGATATCCATTTATGAGTTAAGGAGGAAGCTTGTTGAAAGGGCTGATGAACTTGTCATGAAGCAAAGTGCCATGCCGTAG 561 0.3779 MDMVNQRKKNMGRKKIEIKKVEKESQKQVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPGDKLFCFGQPDTYSVLNSYIKGTTEFEDSKVAENFLTYQDYNRQYVEAQKMLEMEKKKLEDVQNLAKIFNKGGDWWNDSIDDMRWNDSIDDMSSDQLEQFMISIYELRRKLVERADELVMKQSAMP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4686 186 Gene3D - 23 124 IPR036879 GO:0003677|GO:0046983
Mtr4g4686 186 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Mtr4g4686 186 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Mtr4g4686 186 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 183 - -
Mtr4g4686 186 Coils Coil 98 125 - -
Mtr4g4686 186 SUPERFAMILY SRF-like 11 81 IPR036879 GO:0003677|GO:0046983
Mtr4g4686 186 PANTHER MADS BOX PROTEIN 8 183 - -
Mtr4g4686 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Mtr4g4686 186 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Mtr4g4686 186 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Mtr4g4686 186 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4686 Mtr-Chr4 60884235 60885056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4686 8 186 Type I MADS-box Gene Family AT5G60440 35.676 5.37e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr4g4686 SRF-TF 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4686 - - cam:101502875 216.083