Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4676 ATGGAAAGTGATGACGAATGCAATACAGGTCTATGTCTCGGTCTTGGAATGGGTGCAACGAAGGTGAAGAAGCAGAAATTGGTGAATAAACCTGTGATTGCACCTTGTTTTGACCTAGCTTTTGAGCTTTGTTCAAAAGGAGAACCTATGAACGTACACAACAACAACAAGGGTGAAAGAATCAATTTGGAGAGACACCAATATTATCAAAATGTAACGTGTAGCACTGATTCTGATAACAACAATAACAACGATCGTAGAAAGAAACTGAGGCTAACAAAGGAGCAATCATCCATGCTTGAGAGCACCTTCAAGCTCCATAACACTCTTAATCCGGTTCAGAAAATAGCACTTGCTGACCAATTGAGTTTAAAGACAAGACAAATTGAAGTTTGGTTTCAGAACAGGAGAGCAAGGACTAAGCTGAAGCAGATAGAGGTGGATTATGAGTTGTTGAAAAAACATTGTCAAAATCTAAGTGATGAGAACAAAAGATTAAAGAAGGAATTGCAGGAACTCAAGGTTGTTGGACAATTCCCGTTATGCCCTCAACGTTTATCATCAAAACCAGTGGTGACTCATAGTACTTTGTGCTCTTCTTGCGAGCAGAAACCGTTGAAGCACAATGAAGATCAGAAGAATAATTTATTAATTGATGGTTAA 663 0.3861 MESDDECNTGLCLGLGMGATKVKKQKLVNKPVIAPCFDLAFELCSKGEPMNVHNNNKGERINLERHQYYQNVTCSTDSDNNNNNDRRKKLRLTKEQSSMLESTFKLHNTLNPVQKIALADQLSLKTRQIEVWFQNRRARTKLKQIEVDYELLKKHCQNLSDENKRLKKELQELKVVGQFPLCPQRLSSKPVVTHSTLCSSCEQKPLKHNEDQKNNLLIDG* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4676 220 CDD homeodomain 91 144 IPR001356 GO:0003677
Mtr4g4676 220 SMART HOX_1 85 147 IPR001356 GO:0003677
Mtr4g4676 220 SUPERFAMILY Homeodomain-like 72 144 IPR009057 -
Mtr4g4676 220 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 7 214 - -
Mtr4g4676 220 PANTHER - 7 214 - -
Mtr4g4676 220 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Mtr4g4676 220 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Mtr4g4676 220 Coils Coil 135 176 - -
Mtr4g4676 220 Gene3D - 78 147 - -
Mtr4g4676 220 SMART halz 143 186 IPR003106 GO:0006355|GO:0043565
Mtr4g4676 220 Pfam Homeodomain 86 141 IPR001356 GO:0003677
Mtr4g4676 220 Pfam Homeobox associated leucine zipper 143 174 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4676 Mtr-Chr4 60766916 60768504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4676 1 203 Homeobox Transcription Factor Family AT4G37790 41.532 1.30e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr4g4676 Homeodomain 5.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4676 K09338 - gmx:100812222 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4676 4 60766916 60768504 Mtr2g1528 2 16939988 16941873 PCT