Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4669 ATGCATCCTTCAACCAATATGATACCACCACCTTATCGCCATTCAATATCTTCGTCCGTCATGCCTCTTGATCTTAATCAAGATCAAAACCATGACCTTTCTAGTCCAAATTCTTCTTCTTCTTCTTCTTCTTCATTTTCTTCTCTATCACCATCATATCCTACTCTCTTTAACTCACAAGATCAAGTTCAAAAACCATCTTATTACTGCCAAACAAACCACTTACCACATGATCAAGAGGTTGAGAAGATTAATATTCCCTCAAGTGGATCATGGAATTCTTCAACTGCAGAAAACCATGAAAACTACAAGACTAAACACAAGCTGACAATTCGTTGGAAGAAAGAACAAATTAGTGATGAAATGAATAACAATCAAGAAGCTGATCAGGATGGTACTTCGGTGAAGTGGATGTCTTCAAAGATGAGAATAATGAAGAAGATGATGGTTTCTGATCAAACGGGCAGTTCTAACTTAACAAGCAACTCTAAACAGATTAAGTTTGAAGATCAAAAGCAACCACTGTCACCACAAGGAACAGATAATAGCAGCAGCAATAATTATTCAACTATTAGGGTTTGCTCTGATTGCAACACCACTAAGACCCCTCTCTGGAGGAGTGGACCAAGAGGCCCAAAGTCACTTTGCAACGCATGTGGGATTAGACAAAGGAAGGCAAGACGTGCTTTGGCTGCCGCTGCAGCATCAGCAAATGGTACAACAATTGCTGATCAGACAGCTTCTGTGAAGAGAAAAAAGTTGCAAAAGAAAAAAGAGAATAAATCCAAAATTGAGTTTGATTGTTCAACAGTGCATATGAAAAAGAAGCACAAACTTGAAGCAAAACCACCATCTCATCAAAGTAGAAAGGAGTTTATCACTTTTGAGGATTTGAAATTAAGCTTGAGTGAGAATTTGGGTGTTCAACAAGTTTTCCCTCAGGATGAGAGAGAGGCTGCAATCCTTCTCATGGCGTTATCTTATGGATTAGTCCATGGTTGA 1002 0.3872 MHPSTNMIPPPYRHSISSSVMPLDLNQDQNHDLSSPNSSSSSSSSFSSLSPSYPTLFNSQDQVQKPSYYCQTNHLPHDQEVEKINIPSSGSWNSSTAENHENYKTKHKLTIRWKKEQISDEMNNNQEADQDGTSVKWMSSKMRIMKKMMVSDQTGSSNLTSNSKQIKFEDQKQPLSPQGTDNSSSNNYSTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALAAAAASANGTTIADQTASVKRKKLQKKKENKSKIEFDCSTVHMKKKHKLEAKPPSHQSRKEFITFEDLKLSLSENLGVQQVFPQDEREAAILLMALSYGLVHG* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4669 333 CDD ZnF_GATA 193 221 IPR000679 GO:0006355|GO:0043565
Mtr4g4669 333 MobiDBLite consensus disorder prediction 151 187 - -
Mtr4g4669 333 ProSiteProfiles GATA-type zinc finger domain profile. 188 224 IPR000679 GO:0006355|GO:0043565
Mtr4g4669 333 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 7 333 - -
Mtr4g4669 333 MobiDBLite consensus disorder prediction 23 53 - -
Mtr4g4669 333 Pfam GATA zinc finger 194 227 IPR000679 GO:0006355|GO:0043565
Mtr4g4669 333 ProSitePatterns GATA-type zinc finger domain. 194 219 IPR000679 GO:0006355|GO:0043565
Mtr4g4669 333 SMART GATA_3 188 239 IPR000679 GO:0006355|GO:0043565
Mtr4g4669 333 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 7 333 - -
Mtr4g4669 333 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 227 - -
Mtr4g4669 333 Gene3D - 190 265 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4669 Mtr-Chr4 60708245 60710151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4669 23 333 C2C2-Gata Transcription Factor Family AT4G26150 39.607 2.75e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr4g4669 GATA 5.6e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4669 - - mtr:MTR_4g126350 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4669 4 60708245 60710151 Mtr4g4669 4 60708245 60710151 ECH
Mtr4g4669 4 60708245 60710151 Mtr2g1533 2 17047789 17050466 PCT