Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4646 ATGGGTACAATGTTGGGTGACGCCACGAACTGGAACGAAGATTCGTACAGAGAAGCCGTATTGAAAGAAAGAGAGATTCAAACACAAACTGTTTTCAGAACAGCTTGGGCTCCTTCTCAATCTCAACCTCAATCTCTCTTCGTTGCTTCCAGTGATGGTTCCATCGCTTCTTACTCTCTCCCTTCCACCATCACCGCTTCTAAGCTCAAAAATCCATTTGGTTTTGTTAATGCTTATGCGGATGATTTATTGGCTGAGCCAGATTGCTTATTTCAAGCGCATCATGGGTCTGCTTATGATGTCAAATTCTATGGTGATGATGAAAATGCTCTCTTGCTCAGTTGTGGTGATGATGGGCGGATTCAAGGATGGAGATGGAAGGAACTTACAAGCTTCAAGTATACTATTTCTTCAGAAGGAAATGATATCAAGCCCGTCCTTGATGTGGTAAATCCTCAACACAAAGGTCCTTGGGGTTCACTTTCACCTCTCCCTGAGAATAATGCTATTGCTGTAAATACTCAGGCGGGGTCTGTTTTCGCTGCGTCCGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAATTAAAAACGGTATTCAAGGGACACTCTGATTACTTGCATTGTATTGTTGCTCGCAACTCATCCAATCAGATCATAACCGGTTCAGAGGATGGGACAACACGAATTTGGGATTGCAAGAGTGGAAAGTGTATCCAAGTGATTGATCCAGCAAAACATTTGAAGTTAAAAGGACCTATTTCATGGGTTGGCTCTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTGCAGAGTGCACGTTAAATTTTTCCACTCGAGCTTCTGTACAGGATCTGTTATTCGACAGTAATCAAATTCTGACAGTTGGTGCAGATCCTATACTCAATCGCTTTGACATGAACGGACTACGTTGCTCCTCCATCAGCCTTTTCTATCTCCTTACATCCAGCAGGGGTTATTGCCGTTGGTGGCTACGGATGTCTTGTGGATGTAATCTCGCAATTTGGCAGCCACATGTGCACATTTCGATGCCAATGTGTTTAGCTAGGTTCGCAATATATAGTTGTAGTCAAGAGCCAAAAGCCCAAAAAATATTCCCAGCTCAATGTATAACAAGATCATTTAGATTTATAATTGTTGATTTGGCAGTAGATAAAATAATTATCTATTTCCCTAAGGTACCCTATGTACATTTAACCATCATAGATGCAGGCGATGGTTTGGGAAGTGCCAATGTTACACCTTTATGTTGTGGTGGCTGGCTTTCATCATTTAAGCCATTTCTCAACCATGATCTACAAATTATGGCTGGACTTGCACCCGAGGGGTCACAATTCGATGCTGGGAAATTTGATCAAAAAATGAATGACTTGATTGCAGCTGATGGAGATGAGTTCTGGACTTCTTACGATGAGGTTTATGATAGTTTTGATGCTATGGGTTTGGCAGAGAATCTCCTCAGGGGAATTTATGCATATGGTTTTGAAAAGCCATCTGCCATTCAGCAAAGGGGCATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAGTCTGGAACCGGGAAAACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGATTACAATGTGACTCAGTGCCAGGCCTTGGTTTTAGCTCCAACTCGTGAACTCGCTCAGCAGATTGAGAAGGTTATGCGTGCGCTTGGAGACTATCTAGGTGTTAAGGTGCATGCTTGTGTTGGAGGTACAAGTGTTCGTGAAGACCAACGTATTCTATCAACTGGTGTTCATGTTGTGGTTGGTACTCCTGGTCGTGTGTTTGATATGCTGCGCAGACAGTCTCTTCACCCAGATTACATCAAGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATCTATGATATCTTTCAGCTGCTGCCGGGTAAGATTCAAGTAGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCACTTGAGATCACAAGGAAGTTTATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACCTTAGAGGGTATTAAGCAGTTTTATGTCAATGTTGAGAAAGAGGAGTGGAAGCTGGACACACTCTGTGATCTTTATGAGACATTAGCCATCACTCAGAGTGTCATTTTTGTGAACACCAGGAGGAAAGTTGATTGGTTGACTGACAAAATGCGAAGCCGAGACCATACAGTCTCAGCTACTCACGGAGACATGGATCAAAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCTCGTGTTTTAATAACTACCGATCTGTTGGCTCGTGGTATTGATGTCCAACAAGTGTCTCTGGTTATAAATTTTGATCTCCCTACGCAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGAAGGTTTGGTAGAAAAGGTGTTGCCATTAACTTTGTCACGAAGGAAGATGAAGGAATGCTGCGAGATATCCAGAAGTTTTACAATGTGTTAGTTGAGGAGCTGCCATCAAATGTTGCTGAGCTTCTCTGA 2616 0.4312 MGTMLGDATNWNEDSYREAVLKEREIQTQTVFRTAWAPSQSQPQSLFVASSDGSIASYSLPSTITASKLKNPFGFVNAYADDLLAEPDCLFQAHHGSAYDVKFYGDDENALLLSCGDDGRIQGWRWKELTSFKYTISSEGNDIKPVLDVVNPQHKGPWGSLSPLPENNAIAVNTQAGSVFAASGDSCAYCWDVETGKLKTVFKGHSDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCIQVIDPAKHLKLKGPISWVGSVALDASESWLACSSGRNISLWNLPAAECTLNFSTRASVQDLLFDSNQILTVGADPILNRFDMNGLRCSSISLFYLLTSSRGYCRWWLRMSCGCNLAIWQPHVHISMPMCLARFAIYSCSQEPKAQKIFPAQCITRSFRFIIVDLAVDKIIIYFPKVPYVHLTIIDAGDGLGSANVTPLCCGGWLSSFKPFLNHDLQIMAGLAPEGSQFDAGKFDQKMNDLIAADGDEFWTSYDEVYDSFDAMGLAENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYNVTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSTGVHVVVGTPGRVFDMLRRQSLHPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDEGMLRDIQKFYNVLVEELPSNVAELL* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4646 871 Gene3D - 489 706 IPR027417 -
Mtr4g4646 871 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 529 699 IPR014001 -
Mtr4g4646 871 PANTHER RNA HELICASE 481 871 - -
Mtr4g4646 871 SMART helicmild6 751 832 IPR001650 -
Mtr4g4646 871 SMART WD40_4 17 59 IPR001680 GO:0005515
Mtr4g4646 871 SMART WD40_4 154 192 IPR001680 GO:0005515
Mtr4g4646 871 SMART WD40_4 245 283 IPR001680 GO:0005515
Mtr4g4646 871 SMART WD40_4 286 322 IPR001680 GO:0005515
Mtr4g4646 871 SMART WD40_4 195 234 IPR001680 GO:0005515
Mtr4g4646 871 SMART WD40_4 84 125 IPR001680 GO:0005515
Mtr4g4646 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 234 - -
Mtr4g4646 871 PANTHER EUKARYOTIC INITIATION FACTOR 4A-8-LIKE 481 871 - -
Mtr4g4646 871 Pfam WD domain, G-beta repeat 197 234 IPR001680 GO:0005515
Mtr4g4646 871 SMART ultradead3 517 714 IPR014001 -
Mtr4g4646 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 243 IPR001680 GO:0005515
Mtr4g4646 871 SUPERFAMILY WD40 repeat-like 27 333 IPR036322 GO:0005515
Mtr4g4646 871 Gene3D - 248 334 IPR015943 GO:0005515
Mtr4g4646 871 CDD DEADc_EIF4A 502 700 - -
Mtr4g4646 871 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 645 653 IPR000629 -
Mtr4g4646 871 Gene3D - 6 247 IPR015943 GO:0005515
Mtr4g4646 871 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 710 871 IPR001650 -
Mtr4g4646 871 Pfam Helicase conserved C-terminal domain 724 832 IPR001650 -
Mtr4g4646 871 CDD SF2_C_DEAD 711 841 - -
Mtr4g4646 871 Pfam DEAD/DEAH box helicase 523 684 IPR011545 GO:0003676|GO:0005524
Mtr4g4646 871 Gene3D - 707 871 IPR027417 -
Mtr4g4646 871 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 498 526 IPR014014 GO:0003724
Mtr4g4646 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 852 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4646 Mtr-Chr4 60450487 60466008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4646 459 871 Eukaryotic Initiation Factors Gene Family AT1G72730 87.923 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4646 K03257 - pvy:116113663 1206.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4646 4 60450487 60466008 Mtr4g4646 4 60450487 60466008 ECH
Mtr4g4646 4 60450487 60466008 Mtr2g1572 2 17568264 17572393 PCT