Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4619 ATGGGGAGAAGTCCTTGTTGTGCAAAGGAGGGATTGAACAGAGGTGCTTGGACAGCTCATGAAGACAAAATTCTCTCAGACTACATTAAGCTCCATGGTGAAGGAAAATGGAGAAACCTTCCCAAAAGAGCAGGTTTAAGAAGATGTGGAAAAAGTTGTAGACTTAGATGGTTGAATTATCTAAGACCAGATATTAAGAGAGGCAACATATCCTCAGATGAAGAAGATCTTATCATCCGACTTCACAAACTACTTGGAAATAGATGGTCTCTAATAGCTGGAAGACTACCAGGGCGAACAGACAATGAAATCAAGAATTATTGGAACACGAATTTAGGAAAAAAGGTTAAAGATCTCCAACAACAAAACACCAACAACTCTACTCCAAAAAATGCAAAGATCGCACATAAACAGAACAATCCTAAACCAATGGTGCCAAACTCACATGTTGTTCGTACAAAAGCTACCAAGTGCTCTAAGGTATTATTCATGAATTCACTCCCTAACTCATCAACAATGCAGAATTTGCAGAACAAAGTTGAGACAGAGACAAAAACAAAGCCATCAATGCATGTTGATAGCAGGGATAGTGATTCAATGAGTAACAACCAAATGGAGAATGGTAATGAATTTTTGTCATTTTCAGATGCGAAAAAAGGACTATCCACAGATTTGCTAGTTGATTTTAACATGGGAGATCATGATATTAGCTTATCCGAACTTTTGAACTCGGATTTTTCAACTGCATGCAATTTTGATTACAATGAGTTATTGTCACCTTGTTCTGACCAGACTCCTATGTTTTCGGATGAGATTCTCAAGAACTGGACAGAATGTAGTTTTGTTGATGAGAAAAATGTGACTAACAACCTTCATTATTTTACTTCTTTTCTCGAATCCAGTGAGGATGTACTTGGAGAATGA 924 0.3734 MGRSPCCAKEGLNRGAWTAHEDKILSDYIKLHGEGKWRNLPKRAGLRRCGKSCRLRWLNYLRPDIKRGNISSDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLQQQNTNNSTPKNAKIAHKQNNPKPMVPNSHVVRTKATKCSKVLFMNSLPNSSTMQNLQNKVETETKTKPSMHVDSRDSDSMSNNQMENGNEFLSFSDAKKGLSTDLLVDFNMGDHDISLSELLNSDFSTACNFDYNELLSPCSDQTPMFSDEILKNWTECSFVDEKNVTNNLHYFTSFLESSEDVLGE* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4619 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr4g4619 307 PANTHER TRANSCRIPTION FACTOR TT2 1 260 - -
Mtr4g4619 307 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Mtr4g4619 307 CDD SANT 16 61 IPR001005 -
Mtr4g4619 307 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 260 - -
Mtr4g4619 307 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr4g4619 307 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mtr4g4619 307 MobiDBLite consensus disorder prediction 181 201 - -
Mtr4g4619 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr4g4619 307 MobiDBLite consensus disorder prediction 124 146 - -
Mtr4g4619 307 CDD SANT 71 112 IPR001005 -
Mtr4g4619 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr4g4619 307 SMART sant 13 63 IPR001005 -
Mtr4g4619 307 SMART sant 66 114 IPR001005 -
Mtr4g4619 307 Gene3D - 70 144 - -
Mtr4g4619 307 Gene3D - 14 66 - -
Mtr4g4619 307 MobiDBLite consensus disorder prediction 124 147 - -
Mtr4g4619 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4619 Mtr-Chr4 60196529 60198095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4619 4 150 MYB Transcription Factor Family AT3G13540 59.740 6.88e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g4619 Myb_DNA-binding 9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4619 K09422 - gmx:100802704 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4619 4 60196529 60198095 Mtr4g4619 4 60196529 60198095 ECH