Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4617 ATGATGAATGGAAGAAACAGGTATCCTTTTACTCCAACTCAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAATACATGGCTTCTGGTATTTCCATTCCTCCTGATCTTCTACTCACTATCAAAAGAAGCTACTTAGACTCTTCAAGACTCTCACCTCATCAGTCTCAACACTTTGGGTGGAACTATTTGCCAATGGGATTAGGAAGAAAAATAGACCCAGAGCCAGGTAGGTGTAGAAGAACAGATGGAAAGAAATGGAGATGTTCAAAAGAAGCATATCCAGATTCAAAGTACTGTGAAAGGCACATGCATAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAAACACAGATGCTCCTGCTGCTACTTCAACAATCTTATCAATTACTAAAAATAGTAGTCTTGATTCTGATCATAACACTGCAGCACTAACATCAACAACCCATGACACTAATTACCATTACCCTCAACACTCTTCTTATGCTTCTTCCCATCTTAACCACTCTTTCCTTTACCATAACCCTCCATCCTCAAGGCCTAACTTCTCATTTCAAGACAATAGTGCTCCCTTGTTTCTTGACAGTAATGGTTCTTCCTCTCACAATAACAACAACACTGATTGCAGGAACAGATATGTTTATGGACTGAAAGAGGAGGTGGATGAACATGCTTTCTTCACTGAACCTTCTGGAACTATAAGAAGTTTATCAGCTTCTTCAATGGATGATTCATGGCAACTCACACCACTCACTATAAGCTCATCTTCCTCTTTTAAACAGAGGAATTGTTCTGGTTTATCAAATGACAATGAGTACTCTTACTTGCAACTTGACAACAACTCAAAACAACCACAGCAAGATCAAGGTTGTTACATCTCAGGTAGTGAAGAAACATTCATGAAACATGGGAAAGAAGAACCTCAGAAGATTTTTCATCGTTTCTTTGATGAATGGCCACCCAAAAGCAGCAGAAACTCATGGCTTGATTTGGATGATAAATCATCCACCACTCAGCTTTCAATCTCCATTCCTACATCTTCTCATGATTTCACAACTTTTAGTTCCACAAACCAACGAGATGGTTGA 1107 0.3921 MMNGRNRYPFTPTQWQELEHQALIYKYMASGISIPPDLLLTIKRSYLDSSRLSPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTNTDAPAATSTILSITKNSSLDSDHNTAALTSTTHDTNYHYPQHSSYASSHLNHSFLYHNPPSSRPNFSFQDNSAPLFLDSNGSSSHNNNNTDCRNRYVYGLKEEVDEHAFFTEPSGTIRSLSASSMDDSWQLTPLTISSSSSFKQRNCSGLSNDNEYSYLQLDNNSKQPQQDQGCYISGSEETFMKHGKEEPQKIFHRFFDEWPPKSSRNSWLDLDDKSSTTQLSISIPTSSHDFTTFSSTNQRDG* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4617 368 PANTHER - 2 355 IPR031137 GO:0005634|GO:0006351|GO:0032502
Mtr4g4617 368 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mtr4g4617 368 ProSiteProfiles WRC domain profile. 74 118 IPR014977 -
Mtr4g4617 368 Pfam WRC 75 117 IPR014977 -
Mtr4g4617 368 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mtr4g4617 368 PANTHER GROWTH-REGULATING FACTOR 6 2 355 - -
Mtr4g4617 368 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4617 Mtr-Chr4 60177188 60179646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4617 7 117 GRF Transcription Factor Family AT3G13960 71.053 5.91e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Mtr4g4617 WRC 7.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4617 - - mtr:MTR_4g125490 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4617 4 60177188 60179646 Mtr4g4617 4 60177188 60179646 ECH
Mtr4g4617 4 60177188 60179646 Mtr2g1622 2 18299032 18301795 PCT