Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4589 ATGTTGCCACAGAAGTTTAGGCAGAATCCAATGATTGAGCAACACTCTCTCTACCAACACCCTGCTCTTATTACTCCACAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACTTGCCGCAGTGTTTATGTCGGCAACATTCATCCTCAGGTTTCAGAGCCCCTGCTTCAAGAGCTGTTTTCAAGTGCTGGTGCCCTTGAAGGGTGCAAGCTTATTCGAAAAGAAAAGTCATCATATGGCTTCGTGGACTACTTTGATCGCAGTTCAGCTGCAATTGCTATTGTGACTCTCAATGGGAGGAATATTTTTGGGCAGTCTATCAAAGTTAACTGGGCTTATACTCGTGGTCAGAGAGAAGACACATCAGGACACTTTCATATTTTTGTTGGCGACCTTAGTCCCGAGGTTACAGATGCAACTCTGTATGCTTGCTTCTCCGCATATTCTAGCTGCTCAGATGCAAGGGTAATGTGGGACCAGAAGACAGGCCGATCTAGGGGGTTTGGATTTGTTTCTTTTCGAAATCAGCAGGAAGCCCAAAGTGCCATAAACGATTTAACTGGTAAATGGCTTGGAAGTAGACAGATCCGTTGTAATTGGGCCACAAAAGGAGCTAATATGAATGGTGAAAATCAGAGTTCAGAGTCCAAAAGTGTTGTGGAGTTAACTAGTGGAACATCTGAAGAAGCGCAGGAAATGACCAGTGATGACAGTCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCCGAGGTTACTTCTGTTGATCTCCATCATCATTTTCATGCCCTTGGTGTTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGGTGAAGCAGCTCTTGCTATACAGATGGGCAATACTCGGTTTCTGTTTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCCAGGAACAGCCTCTACTCCTCTTCCACCACCAGCTTCTACGCATGTACCAGTGCCAGGGTTTTCACCTGCCGGTCTTGCATTGTATGAACGCCAGTTGGCTTTGAGCAAAATGAATGAGGCACATGCCGTAAAGCGGGCAGCCATGGGAATGGGTGCTCTTGGGGCTGGGTATGGGGCAGGATTCCCTAATGTTGCCACCACCCAGCACCTAATGTACTACCAGTAA 1215 0.4634 MLPQKFRQNPMIEQHSLYQHPALITPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRSSAAIAIVTLNGRNIFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQMGNTRFLFGKPIKCSWGSKPTPPGTASTPLPPPASTHVPVPGFSPAGLALYERQLALSKMNEAHAVKRAAMGMGALGAGYGAGFPNVATTQHLMYYQ* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4589 404 SUPERFAMILY RNA-binding domain, RBD 126 218 IPR035979 GO:0003676
Mtr4g4589 404 SMART rrm1_1 47 116 IPR000504 GO:0003723
Mtr4g4589 404 SMART rrm1_1 253 322 IPR000504 GO:0003723
Mtr4g4589 404 SMART rrm1_1 132 205 IPR000504 GO:0003723
Mtr4g4589 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Mtr4g4589 404 SUPERFAMILY RNA-binding domain, RBD 243 331 IPR035979 GO:0003676
Mtr4g4589 404 Gene3D - 229 330 IPR012677 -
Mtr4g4589 404 CDD RRM1_TIA1_like 48 118 - -
Mtr4g4589 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Mtr4g4589 404 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 3 389 - -
Mtr4g4589 404 MobiDBLite consensus disorder prediction 210 250 - -
Mtr4g4589 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Mtr4g4589 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Mtr4g4589 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Mtr4g4589 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Mtr4g4589 404 Gene3D - 7 129 IPR012677 -
Mtr4g4589 404 Gene3D - 130 225 IPR012677 -
Mtr4g4589 404 CDD RRM3_TIA1_like 252 326 - -
Mtr4g4589 404 SUPERFAMILY RNA-binding domain, RBD 24 127 IPR035979 GO:0003676
Mtr4g4589 404 CDD RRM2_PUB1 132 206 - -
Mtr4g4589 404 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 3 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4589 Mtr-Chr4 59948481 59953230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4589 47 320 Eukaryotic Initiation Factors Gene Family AT3G16380 27.211 2.15e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4589 K13201 - gmx:100813736 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4589 4 59948481 59953230 Mtr4g4589 4 59948481 59953230 ECH