Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4585 ATGAAGGCTCCAAACAATGGATACATGCCCAATTCAGGAGAAGGGGAAAGGAAGACCATCAATTCAGAATTATGGCATGCTTGTGCTGGACCTTTGGTTTCCTTGCCACCCGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGCGAGCAAGTTGCGGCTTCCATGCAAAAACAGACCGACTTCATACCCAGTTACCCCAATCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCCCTGCATGCTGATCCTGAAACTGACGAGGTCTACGCACAAATGACACTTCAACCTGTAAACAAATATGACAAGGATGCAATATTGGCATCAGATTTTGGTCTCAAACAAAACCGTCAACCTACCGAATTCTTTTGCAAAACTCTAACTGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTTCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTTTTCCATGCAACCTCCCGCTCAGGAGCTTGTTGCTAAAGATCTACATGACAATACATGGGCATTTAGACATATTTATAGAGGGCAACCAAAGAGACATCTGTTGACTACTGGTTGGAGTGTATTTATCAGCACAAAGAGACTTTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAACTTCTTTTAGGCTTGAGGCGCGCTAATAGACAGCAGCCAGCGCTTTCTTCATCAGTAATATCCAGTGACAGTATGCATATTGGCATTTTAGCTGCTGCCGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATATTACAATCCAAGGGCCAGCCCCTCCGAATTTGTTGTTCCATTGGCCAAGTATAACAAAGCCATGTACACTCAAGTGTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACAGAGGAGTCTGGAGTACGTAGATATATGGGTACAGTTACAGGAATTAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCGACAGCTGGTGAACGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCAGTAGTGACTCCTTTCTATATTTGTCCACCTCCTTTTTTCAGGCAAAACTTCCCTGGCCACCCTGGCATGCCAGATGACGGGTCTGATGTAGAAAATTCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAGTCTTCCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAAAAATCAGTTTTCAGGTGCTCAATCAGGATGTTTCCCATCCATGCTCTCGTCTAATACTCTGCATAGTAATCTTAGCACCGATGACCCATCCAAATTATTAAGTTTCCAAGCTCCAGCCCTCTCTGCACCAAATCTTCAATTTAACAAACCTAATTTACCAAATCAAATCAACCAATTGCAACAGTCCCCAACATCATGGCCTCAGCAGCAACAGCAGCAGCAGCAGCCGCTGCAGCAACAACAGCAGCAGCAACAACAACAGCAACAGCAGCTGCAGTCATTGTCACAAATACCAATGAACCAGTTCCAGCAACAAAGGCAACAGCAGCTGCCTGAATCACAAAATCTGACACTGCTACAACAACAAATTACTCATCAGCTACAGAAACAGCCACAGTCATCTCAACATGCTATTATGAATAATGGTGTAGTTGCTTCTAACCAGATTACAAATCAGTTTCAACAACCGCAACCACTAGCTTACGCTCAGCTTCAGCAACAACAACAGTTGCTCCAGGGAAGTATCCCACTCCAGCAAAGTATCCAATCAGCCAGTAAGAATGCATTCCCACTGACATCCCTGCCACATGACTCACAATTTCATCAACAGATAGACCAGCAAGCGAGTCTCTCACAGAGGCAGCAGCAACAGACACAATCACAACAATCTTCACTGCAGGCGCTGCAACAAAGCCAGCCACAGAGGGTGCAACCAAATCTTCAAGCAACTCAAATGTCTCAACAAAACACCTCGGAGCAACAACTGCAGCTACAGTTTTTGCAAAAATTGCAGCAGCAGCAGCAACAACAACAACTTCTTTCGACGTCTAACCCACTTTTGCAATCTCAGCTTCTACAGCAACAAAATACTAACCAACAAAACCAGCAATTATCACAGCTTCCTATATCCCAACATCACAATCAACAGTTTGGCAATAATGCATTTTCGACGGAGAAGCTTCTCAACAGCAACAATTTGTCTTCTTCGTCTCTTATGCAATCACAGCAGCTTTCTGTGAATCAAACCCGAAATACACAGAAGCCACTCACAATTACTAGAGTTCCCTCTACACTTACAGATGGAGAGGCTCCATCATGCTCAACATCGCCATCTACTAATAACTGCCGTATAACTCAACCAAACCTCCTGAAGAGAAATCAACAAGTACCAACTACAATAGGCGGGATCTTGGCAGTGGAGCCCACCAGTAATCTGATACATGACCTTCAGAGTAAGTCTGACATGCATATCAAACACGAGTTCTCAAATGTAAAAGGATCTGACCAGCTAAAATATAAAGGTACAACTACTGATCAACTGGAAGCTTCTTCTGGAACATCATACTGTCTGGATCCTGGCAACGTTCAACAGAATTTGCCACTATCCAACTTCTGCATGGAAGGGGATGTCCAATCAAACCCTCGAATCAATCTGCCGTTTGACTCTAATCTTGATGGTCTAATGTCTGATACTATGCTTTCAAGGGGTTTTGACTCTCAAAAAGATCTTCAAAATTTGTTGTCTAATTATGATGCTGCTCCAAGAGACATTGAAACCGAGCTGTCCACTGCTGACATCAGCTCACAGTCATTTGGATTGCCAGACATGTCTTTTAAGCCTGGTTGCTCAAATGATGTTGGCATTAATGATACTTCTGGGGTTTTGAACAATGGCTTGCGGGCAAATCAAAATCAACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGGTGTATTGACGTCACCCGTTACAAGGGATATGATGAACTCCGGTATGATTTAGCACGAATGTTTGGGATTGAAGGGCAACTAGAAGATCCTCAAAGGACTGACTGGAAGTTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGATCCTTGGGAGGAATTTGTAAGTTGTGTTCAGAGTATAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGTTTGGATGGGGATTTAGGTAATGTTACAATCCCAAATCAAGCATCCAGTGGGACAGATAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCATTCAATAGGTGA 3363 0.4335 MKAPNNGYMPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKDAILASDFGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRQNFPGHPGMPDDGSDVENSFKRAMPWLGDDFGMKDASSSVFPGLSLVQWMSMQQKNQFSGAQSGCFPSMLSSNTLHSNLSTDDPSKLLSFQAPALSAPNLQFNKPNLPNQINQLQQSPTSWPQQQQQQQQPLQQQQQQQQQQQQQLQSLSQIPMNQFQQQRQQQLPESQNLTLLQQQITHQLQKQPQSSQHAIMNNGVVASNQITNQFQQPQPLAYAQLQQQQQLLQGSIPLQQSIQSASKNAFPLTSLPHDSQFHQQIDQQASLSQRQQQQTQSQQSSLQALQQSQPQRVQPNLQATQMSQQNTSEQQLQLQFLQKLQQQQQQQQLLSTSNPLLQSQLLQQQNTNQQNQQLSQLPISQHHNQQFGNNAFSTEKLLNSNNLSSSSLMQSQQLSVNQTRNTQKPLTITRVPSTLTDGEAPSCSTSPSTNNCRITQPNLLKRNQQVPTTIGGILAVEPTSNLIHDLQSKSDMHIKHEFSNVKGSDQLKYKGTTTDQLEASSGTSYCLDPGNVQQNLPLSNFCMEGDVQSNPRINLPFDSNLDGLMSDTMLSRGFDSQKDLQNLLSNYDAAPRDIETELSTADISSQSFGLPDMSFKPGCSNDVGINDTSGVLNNGLRANQNQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVTIPNQASSGTDSGNAWRGQYDDNSAASFNR* 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4585 1120 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Mtr4g4585 1120 ProSiteProfiles PB1 domain profile. 993 1086 IPR000270 GO:0005515
Mtr4g4585 1120 Pfam AUX/IAA family 988 1079 IPR033389 -
Mtr4g4585 1120 SMART B3_2 126 228 IPR003340 GO:0003677
Mtr4g4585 1120 CDD B3_DNA 125 217 IPR003340 GO:0003677
Mtr4g4585 1120 PANTHER AUXIN RESPONSE FACTOR 19 1 1108 - -
Mtr4g4585 1120 MobiDBLite consensus disorder prediction 469 502 - -
Mtr4g4585 1120 Gene3D - 289 360 - -
Mtr4g4585 1120 Gene3D - 988 1082 - -
Mtr4g4585 1120 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Mtr4g4585 1120 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1108 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr4g4585 1120 MobiDBLite consensus disorder prediction 625 673 - -
Mtr4g4585 1120 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Mtr4g4585 1120 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr4g4585 1120 Coils Coil 502 522 - -
Mtr4g4585 1120 MobiDBLite consensus disorder prediction 1092 1120 - -
Mtr4g4585 1120 SUPERFAMILY CAD & PB1 domains 997 1071 - -
Mtr4g4585 1120 Gene3D - 124 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4585 Mtr-Chr4 59926490 59933448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4585 1 487 B3 DNA Binding Superfamily AT1G19220 82.752 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr4g4585 AUX_IAA 1.9e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4585 K14486 - gmx:100816054 1578.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4585 4 59926490 59933448 Mtr4g4585 4 59926490 59933448 ECH
Mtr4g4585 4 59926490 59933448 Mtr2g1672 2 18941453 18948968 PCT