Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4563 ATGGCTAATTTATCTTCTAAACTCTTTCTTCTTCTCTTAACAATCTTCCATTCACCCACTTCAGCTTTCAACAACACCACTTCTTCCTCAACAACATTGCATGCAAAAATCTCTTCAATAAAATCCTTCTGCAGAAATACTCCATATCCTGAAGTATGCTTCAATTCATCAAAACTCTCCATCTCAATAGACATAAATCCAAACATCATTAACATCCTTCTTCATTCCCTCCAAGTATCAATATCTGAAACCACAAAGCTCTCTAATCAATTCAACAATGCTCACTCAAACATCGTAGAGAACAAAAGAGGAGCTATACAAGATTGCGAAGAACTTCAACAATCTACCTTATCTTCACTAAAAAGATCATTGTCTGGAATTCGTTCATCAAAATCTAGAAAGTTAGTTGATGCAAGAACTTATCTAAGTGCAGCCCTTACCAACAAGAACACATGTTTAGAAAGCTTAGATTCTGCTTCAGGTACACTGAAGCAAGTTTTAGTTGATTCAGTGATCAACACTTACAAACATGTTAGTAATTCTCTGTCAATGTTTCCTAAGCCTGAGGTAAGAGCTTCTAAAGGACATGGAAACCGGCGTTTAATGGATGCTCTCATGTGGTTATCAAGCAAAGATCACCGCAGGTTCTTGCAAAGCACCGACAATGTGATTGTTGTGGCTGCAGATGGAACGGGAAACTTTAGCACCATTAATGAAGCCATTGAATTTGCTCCAAATAACAGCTATGCTAGGATAATAATCTATGTAAAAGAAGGGATATATGAGGAAAATGTTGAAATTTCAAGCAATAAAACCAATATTGTTCTACTTGGTGATGGAAGGGATCAAACTGTCATTACTGGCAATAGAAGTGATGTTGATGGATGGACCACCTTCAGATCTGCAACTTTAGCGGTTTCTGGCGAAGGCTTTCTGGCACGTGATATAGCTTTTGAGAACAAGGCAGGACCAGAGAAGCATCAAGCAGTTGCATTAAGAGTGAACGCAGACGTAACAGCTTTTTACAAATGTGCAATGTATGGTTACCAAGACACACTTTATGTTCACTCATTTAGACAATTCTATAGAGAGTGTGACATTTTTGGGACCATAGATTACATATTTGGAAATGCAGCAGTAGTTTTACAAGCATGTAACATTATATCAAGAATGCCATTACCTAACCAATACACTGTAATCACTGCACAGTCAAGAGATTCACCTGATGAAGACACTGGCATCTCAATCCAAAACTGTTCAATTTTAGCTACTACTGATTTGTATAACAACTATAACAACATCAAGAGTTACCTTGGAAGGCCTTGGAGGGTTTATTCTAGGACTGTTTTCATTGAGTCTTACATTGATGTGTTCATTGATCCAATGGGATGGACGAAATGGTCTTCTGATGATGATAAAGGGTTGGACACTTTGTATTATGGTGAGTTTGCAAATTATGGACCTGGTTCTGCGACGGATAACCGAGTAAAATGGTTAGGGTATCATTTAATGGATTTTGATAGTGCAAATAATTTCACTGTTTCAGAGTTTATTATCGGTGATGCTTGGATTGGTTCTACTTCTTTTCCTTATGATGACGGGATTTGA 1608 0.375 MANLSSKLFLLLLTIFHSPTSAFNNTTSSSTTLHAKISSIKSFCRNTPYPEVCFNSSKLSISIDINPNIINILLHSLQVSISETTKLSNQFNNAHSNIVENKRGAIQDCEELQQSTLSSLKRSLSGIRSSKSRKLVDARTYLSAALTNKNTCLESLDSASGTLKQVLVDSVINTYKHVSNSLSMFPKPEVRASKGHGNRRLMDALMWLSSKDHRRFLQSTDNVIVVAADGTGNFSTINEAIEFAPNNSYARIIIYVKEGIYEENVEISSNKTNIVLLGDGRDQTVITGNRSDVDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADVTAFYKCAMYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVLQACNIISRMPLPNQYTVITAQSRDSPDEDTGISIQNCSILATTDLYNNYNNIKSYLGRPWRVYSRTVFIESYIDVFIDPMGWTKWSSDDDKGLDTLYYGEFANYGPGSATDNRVKWLGYHLMDFDSANNFTVSEFIIGDAWIGSTSFPYDDGI* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4563 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 186 IPR035513 -
Mtr4g4563 535 Pfam Plant invertase/pectin methylesterase inhibitor 39 184 IPR006501 GO:0004857
Mtr4g4563 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 187 IPR035513 -
Mtr4g4563 535 Pfam Pectinesterase 224 521 IPR000070 GO:0030599|GO:0042545
Mtr4g4563 535 SUPERFAMILY Pectin lyase-like 220 532 IPR011050 -
Mtr4g4563 535 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Mtr4g4563 535 Gene3D - 222 535 IPR012334 -
Mtr4g4563 535 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 185 IPR006501 GO:0004857
Mtr4g4563 535 SMART PMEI_2 35 184 IPR006501 GO:0004857
Mtr4g4563 535 PANTHER PECTINESTERASE 7 534 - -
Mtr4g4563 535 CDD PMEI-like_3 42 188 - -
Mtr4g4563 535 PANTHER PECTINESTERASE 7 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4563 Mtr-Chr4 59669501 59671879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4563 32 535 Carbohydrate Esterase AT2G26440 62.764 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4563 - K01051 gmx:102666380 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4563 4 59669501 59671879 Mtr4g4563 4 59669501 59671879 ECH