Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4554 ATGGGTTTCTACACTCAACAATCCATCTCCAATTTAACAATAAGTCAAGCCATATATGAAGCTGCTCTAATCATTGCAGTTCTTAGATGGATCATATGTTTAGTTTTCAAAATAATAAAACACACAAGAACAAAACCAGTAGAAGATCAACAACAATACTCTTCTTGTTGTCAAATGTTACCGTTGACAAGTTTCGGAGAAATCAAGGAAAGACATCCAGAAACAGAAGAAACATGTGCTGTTTGTTTGAACAAACTGAAAATGGAAGATGAAGTTAGAGAATTGATGAACTGTGATCATGTGTTTCATAAAGAATGCATAGATAAGTGGTTAGAACATGGTCATGACAATGAAAATCATAACCAAACTTGTCCACTTTGTAGAGCTCCATTGATCAATTCTTATTCACTTTCATCTGAAATTTCAAGCTGTGGATTTTCTCCTCCTCAACCTAGTTGGGCTGTTGAGAGACTTCTTTATCTCTTTGGTGATGATCTCTTGCCTTGTTAA 510 0.349 MGFYTQQSISNLTISQAIYEAALIIAVLRWIICLVFKIIKHTRTKPVEDQQQYSSCCQMLPLTSFGEIKERHPETEETCAVCLNKLKMEDEVRELMNCDHVFHKECIDKWLEHGHDNENHNQTCPLCRAPLINSYSLSSEISSCGFSPPQPSWAVERLLYLFGDDLLPC* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4554 169 ProSiteProfiles Zinc finger RING-type profile. 79 128 IPR001841 -
Mtr4g4554 169 SMART ring_2 79 127 IPR001841 -
Mtr4g4554 169 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 168 - -
Mtr4g4554 169 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 168 - -
Mtr4g4554 169 Pfam Ring finger domain 78 128 IPR001841 -
Mtr4g4554 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 142 IPR013083 -
Mtr4g4554 169 SUPERFAMILY RING/U-box 72 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4554 Mtr-Chr4 59566943 59568054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4554 1 168 C3H Transcription Factor Family AT3G43430 42.373 8.88e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4554 K16281 - mtr:MTR_4g124390 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4554 4 59566943 59568054 Mtr4g4554 4 59566943 59568054 ECH