Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr4g4553 | ATGTCAACAACAGAAGTTCCTCCTCCTTTTCAAGAAGCAGCACGATGTGTTGTCTGCAGTTGCAGTTTCAACACCTTCCGGAGACGGCATCATTGTCGTTGTTGTGGGAGAACATTGTGCAGCGAACATTCATCGGATCAAATGGCTTTACCACAATTTGGCATTTACTCGAATGTACGTGTATGTGCTGATTGTTTCAACAACTCTCGATCTGGGAAGGGTGTACGACAAACTTCTACAGACGGAGTAAACAGCATAACAGATGCTGTTTCTGAATTAGATATTGATGCAAATGTTGATTCAAAAAGAAAACCAACTGCAGATAATAACCTTGCATCAGGCGTTAAAGAGTGTAAGTGTGGAATGCCTCTTTGCATTTGTGAAGCTCCTCCCCCTTCCTCTTCTGCAGTTCCCCAAGAGAAGAAGTCCATCCCAGTTGTTACAGCTCCATCAAATCCTAAACCTAAGAAGACAGATAATGCTTCAAAAAGTAGAAGCTCCAGTTCCACGAACAAGTTTAGTTCTATGTTTAACCCTGGTCATGTAACTACTGGTACCTCAAACAGACCCCAGATTGATTATGAAGTTAATGGGGAGGGTTTACGAGAAGCAATAAAAAATGGTGACATTGCTGCTGTCAAAAAACTTCTTAATGAGGGTGTGGATGCTAATTACAGAGATAAGCAGGGACTGTCTTTATTGCATTTGGCTGCAGTTTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCGGGGGCAAACCTGGAGTATAAAAATGCACAAGGAGAAACACCTTTAGACTGTGCTCCTGCTACACTGCAATACAAAATGAAAATGAAGATGCAGGAAAGTGGAGCAATGGATCAAAGGATTTGA | 879 | 0.413 | MSTTEVPPPFQEAARCVVCSCSFNTFRRRHHCRCCGRTLCSEHSSDQMALPQFGIYSNVRVCADCFNNSRSGKGVRQTSTDGVNSITDAVSELDIDANVDSKRKPTADNNLASGVKECKCGMPLCICEAPPPSSSAVPQEKKSIPVVTAPSNPKPKKTDNASKSRSSSSTNKFSSMFNPGHVTTGTSNRPQIDYEVNGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIVFILMDSGANLEYKNAQGETPLDCAPATLQYKMKMKMQESGAMDQRI* | 293 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr4g4553 | 292 | ProSiteProfiles | Ankyrin repeat region circular profile. | 229 | 260 | - | - | |
| Mtr4g4553 | 292 | PANTHER | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 | 1 | 285 | - | - | |
| Mtr4g4553 | 292 | CDD | FYVE_scVPS27p_like | 9 | 66 | - | - | |
| Mtr4g4553 | 292 | ProSiteProfiles | Ankyrin repeat profile. | 229 | 261 | IPR002110 | GO:0005515 | |
| Mtr4g4553 | 292 | MobiDBLite | consensus disorder prediction | 131 | 191 | - | - | |
| Mtr4g4553 | 292 | ProSiteProfiles | Ankyrin repeat profile. | 201 | 228 | IPR002110 | GO:0005515 | |
| Mtr4g4553 | 292 | SMART | ANK_2a | 196 | 225 | IPR002110 | GO:0005515 | |
| Mtr4g4553 | 292 | SMART | ANK_2a | 229 | 258 | IPR002110 | GO:0005515 | |
| Mtr4g4553 | 292 | Gene3D | - | 167 | 289 | IPR036770 | - | |
| Mtr4g4553 | 292 | SMART | fyve_4 | 2 | 71 | IPR000306 | GO:0046872 | |
| Mtr4g4553 | 292 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 10 | 70 | IPR017455 | - | |
| Mtr4g4553 | 292 | Pfam | Ankyrin repeats (3 copies) | 203 | 270 | IPR002110 | GO:0005515 | |
| Mtr4g4553 | 292 | Pfam | FYVE zinc finger | 11 | 68 | IPR000306 | GO:0046872 | |
| Mtr4g4553 | 292 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 73 | IPR013083 | - | |
| Mtr4g4553 | 292 | SUPERFAMILY | Ankyrin repeat | 201 | 270 | IPR036770 | - | |
| Mtr4g4553 | 292 | MobiDBLite | consensus disorder prediction | 153 | 191 | - | - | |
| Mtr4g4553 | 292 | SUPERFAMILY | FYVE/PHD zinc finger | 9 | 71 | IPR011011 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr4g4553 | 207 | 267 | MAP Kinase Kinase Kinase | AT4G18950 | 40.984 | 5.57e-09 | 54.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr4g4553 | - | - | gmx:100814367 | 487.648 |