Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4552 ATGACTACTTCTAATAGTATCAATAATATTGACATTAACAGCATCAGTGATCAAGAGTCCGTGAAACATTTCTCTGCTGCTAACTGGCCATTGTCAACATCTGGACTAAATGCAATGACCCCTGGTACAACTCAGTTTGCCATCCTCTACAATGGAAGCATGTGTGTCTATGATGGAATTCCTGCAGAAAAGGTGCATGAGATAATGATGATGGCTTCTGCCAATGCCAAGTCTTCTGAAATGAAAAGTGGAATTCCCTTCAATTCACTCTTTTCCAGTACCACCCCTTCTTCTCCACAAGGAAACTCTGACAATTTGCCTTCTCCCCCATCAGTTGGTTTTCCTGCTGCTGAGAAGAGTTCCATTTGCAGGATGCAAGAATTTCCATTAGCACGCAGACAGTCACTTCAAAGGTTTCTTGAGAAGAGGAGAATCAGGGTACGTAGCAAAGCACCTTATACCTCTTCATCATCAAAAGCAGCTAACAACAGTGATAACAACTTCAGTCTAGTAATGGTGTCACTTGAGGGCAAATAA 537 0.419 MTTSNSINNIDINSISDQESVKHFSAANWPLSTSGLNAMTPGTTQFAILYNGSMCVYDGIPAEKVHEIMMMASANAKSSEMKSGIPFNSLFSSTTPSSPQGNSDNLPSPPSVGFPAAEKSSICRMQEFPLARRQSLQRFLEKRRIRVRSKAPYTSSSSKAANNSDNNFSLVMVSLEGK* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4552 178 Pfam Jas motif 129 153 IPR018467 -
Mtr4g4552 178 ProSiteProfiles Tify domain profile. 39 74 IPR010399 -
Mtr4g4552 178 PANTHER DIVERGENT CCT MOTIF PROTEIN 11 169 - -
Mtr4g4552 178 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 11 169 IPR040390 -
Mtr4g4552 178 MobiDBLite consensus disorder prediction 87 115 - -
Mtr4g4552 178 SMART tify_2 39 74 IPR010399 -
Mtr4g4552 178 Pfam tify domain 41 73 IPR010399 -
Mtr4g4552 178 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4552 Mtr-Chr4 59554612 59557348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4552 45 170 Tify Gene Family AT5G20900 39.062 8.85e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Mtr4g4552 tify 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4552 K13464 - gmx:100306655 159.458
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4552 4 59554612 59557348 Mtr2g1718 2 19717671 19720662 PCT