Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4542 ATGTGTGAAACAAACAAGAGTTTTGTAAGCATGAAGCTGCTATTTGTGTTTGGATTCATAGGCTTTGTGATTGTGAAAGGTGTGGATGTGGAACTGAAAGGTTTAGAGAATGGTAATGTGACAGACATGCAATATGTCAGAGGAAGAGGTTTCAACTATAGACCTTTGATGGTTGGTCTTACTCTTATTAATGGAGCTGCTGCTAAAGGAGCTGTCTGCCTTGATGGATCTTTACCGGCTTACCACTTCCATCGTGGATACGGTTCAGGTTCAAACAGTTGGCTAATACATTTGGAGGGAGGAGGCTGGTGTGGAACTGTGAGAAATTGTATTTACAGTAAGAAAACGCGACATGGTTCATCATATTTTATGGAAAAACAAATACCATTTATTGGAATATTGAGCAACAAAGCTGCGGAAAATCCAGATTTTTTCAATTGGAATAGAGTAAAAATTCGTTATTGTGATGGCGCATCGTTTAGTGGGGACAGTCAAAATGAGGCAGCAAGGTTGTATTTCCGAGGGCAGCGCATATGGCAAGCTGCAATGGAAGATTTAATGTCGAAAGGGATGCGCTATGCCAAACAGGCTCTTCTATCTGGATGTTCTGCAGGAGGTTTATCAGCTATACTACATTGCGATGAATTTCGGGAATTGTTTCCAAGAACAACTAGAGTAAAGTGCTTTAGTGATGCCGGATTATTCCTTGACTCTGTTGATGTATCTGGCCGTCGCAGTTTAAGGAATTTGTTTGGCAGTGTAGTGACTTTACAGGGTGCGCATAAGAGCCTTCCAAGAAGTTGTACCAATCACCTCAATCCAATTTTGTGCTTTTTCCCTCAGCATTTAATTGCAAGTGTAAGGACGCCACTATTTCTTCTCAATGCAGCTTATGATACTTGGCAGATTCAAGCCAGTCTAGCTCCACCATCTGCTGACTACCATTGGAATTGGTATGACTGCCGAAAAAATTATGCACGCTGTAGTTCACCACAGATACAATATCTACAAGGTTTTCGAAATCAGATGCTTAGAGTTACAAGACGCTTCTCAAGGTCCCGCCAAAACGGGTTATTCATTAATTCGTGTTTTGCTCACTGCCAATCTGAAAGACAGGATACATGGCATGCACGCGGTTCTCCTCATATTGGAAATAAAGGGATCGCAGATTCTGTCGGGAACTGGTTTTTTGACCGAGTTGGTGTCCAAGCTATTGGGTGTCCTTACCCTTGTGACAAAACATGCCATAATTTGGTTTTCAACTGA 1266 0.4179 MCETNKSFVSMKLLFVFGFIGFVIVKGVDVELKGLENGNVTDMQYVRGRGFNYRPLMVGLTLINGAAAKGAVCLDGSLPAYHFHRGYGSGSNSWLIHLEGGGWCGTVRNCIYSKKTRHGSSYFMEKQIPFIGILSNKAAENPDFFNWNRVKIRYCDGASFSGDSQNEAARLYFRGQRIWQAAMEDLMSKGMRYAKQALLSGCSAGGLSAILHCDEFRELFPRTTRVKCFSDAGLFLDSVDVSGRRSLRNLFGSVVTLQGAHKSLPRSCTNHLNPILCFFPQHLIASVRTPLFLLNAAYDTWQIQASLAPPSADYHWNWYDCRKNYARCSSPQIQYLQGFRNQMLRVTRRFSRSRQNGLFINSCFAHCQSERQDTWHARGSPHIGNKGIADSVGNWFFDRVGVQAIGCPYPCDKTCHNLVFN* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4542 421 PANTHER NOTUM-RELATED 19 420 IPR004963 GO:0016787
Mtr4g4542 421 Pfam Pectinacetylesterase 55 399 IPR004963 GO:0016787
Mtr4g4542 421 PANTHER PECTIN ACETYLESTERASE 19 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4542 Mtr-Chr4 59464601 59469497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4542 57 420 Carbohydrate Esterase AT1G57590 69.231 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4542 K19882 - gmx:100791571 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4542 4 59464601 59469497 Mtr4g4542 4 59464601 59469497 ECH
Mtr4g4542 4 59464601 59469497 Mtr1g3058 1 41844211 41848277 ECH
Mtr4g4542 4 59464601 59469497 Mtr7g3566 7 52681855 52685120 ECH