Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4541 ATGGAAACATATGAACAAATTGATGCTCATCAAACCCAATCATCTTCATCTTCATCTTCTTCAATAGATAGTAACAACTACCCTTCATCACTATGCCTCTCAAGTGTCTACAGAAATAGTAGCAGCAGTAGAAACAGAACAGATTTGAGCACTGACCTCAAACTTGGTCTTAGCATCTCTCCTTCTTCTCAATCTCAATTACCAAGGGAGGAAACATGTGATTGGCCACCAATTAATAAGTCCATATTGAGAAGCACCTTGGCTGAGAAACAAAGACCTTCTTTATTTGTGAAAGTTTACATGGAAGGAATCCCAATTGGAAGAAAATTAAATCTGTTGGAACATCATAGCTATGATGGACTTATTAAAGCTCTTTGTCATATGTTTAGGACCACCATTCTTTGTCCTAACTCTCAACCACTTAATTCATGGAATTTTCATGTGCTAACATATGAAGATCAAGAAGGAGATTGGATGATGGTTGGAGATGTGCCTTGGGAGATGTTTTTGTCCAGTGTGAAGAGGCTGAAGATCACAAGAGCTAACAGCTGCTAG 555 0.3838 METYEQIDAHQTQSSSSSSSSIDSNNYPSSLCLSSVYRNSSSSRNRTDLSTDLKLGLSISPSSQSQLPREETCDWPPINKSILRSTLAEKQRPSLFVKVYMEGIPIGRKLNLLEHHSYDGLIKALCHMFRTTILCPNSQPLNSWNFHVLTYEDQEGDWMMVGDVPWEMFLSSVKRLKITRANSC* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4541 184 Pfam AUX/IAA family 70 181 IPR033389 -
Mtr4g4541 184 MobiDBLite consensus disorder prediction 1 26 - -
Mtr4g4541 184 Gene3D - 88 184 - -
Mtr4g4541 184 ProSiteProfiles PB1 domain profile. 94 183 IPR000270 GO:0005515
Mtr4g4541 184 SUPERFAMILY CAD & PB1 domains 85 178 - -
Mtr4g4541 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 16 184 - -
Mtr4g4541 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 184 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4541 Mtr-Chr4 59450008 59451616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4541 97 178 B3 DNA Binding Superfamily AT2G46530 39.024 3.88e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mtr4g4541 AUX_IAA 2.6e-30 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4541 K14484 - gmx:100818083 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4541 4 59450008 59451616 Mtr4g4541 4 59450008 59451616 ECH