Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4532 ATGGAACCAGAAGACTGGGATTTGAGCGGTGAAGACCTTGATTCTCTTGAAAGAGACGCTTTCCAGAAAATCGCTCAACTCCGCTCCCACCCTTCAAACCCTCCTCCTCCTCCCCCCCCTTCACGTCCTCAAAGAGTTGATGCTTTGCCTCAAGGACCTGCTAGACCACTTCCAAACAACACTAACAACGCGGTTGAGCATTCTAAAGAATTGACTAAAGCTTCGGTCAAATTTTTTCTCCATTCCACTGGAAATATTGCTGCAAAATTTCAATATGATCAGGTAATAGTTGCCGCTTTTAGAAGAATCCCTAAATCATTTTGGAATGCCAAAGAACGCTTATGGTTGTTCCCTCTCTCTTCTTTGTCAGAAGCCGAAAAGGTTCTTAAAGACGTATCCGGTTATAATGTTCAGGTGGAGAACTTGGATCCCTTAGTGCAACGTGCTATTACTGCTGCCACTTCTGTTCCTGATCTTCGAGATCGATATGATAAGATCCCTAGCGATGTTGAATCAAAACTTTTGCCATTTCAGCGAGACGGTATAAGGTTTATATTGCAGCATGGAGGTCGTGCTTTTTTAGCAGATGAAATGGGACTGGGGAAAACGTTGCAGGCCATTGGTGTAGCTGCATGCGTTCAGGATTCGTGGCCTGTTCTCATACTTGCACCATCTGCATTACGTTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTGTTGTCTTATCTCAAATTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGTGAAAAGCAAAATTCATCTGGATGGACTATTCAACATTATCTCATATGATCTGGTGCCAAAGATGCAAAGTACACTCATGGAGTCTGACTTTAAGGTTGTAATTGCTGATGAGTCACACTTTCTGAAAAATGCCCAGGCAAAGAGAACAACTGCTTCTCTTCCGGTTATAAAGAAAGCACAATATGCAATATTGCTTAGTGGAACTCCTGCTTTATCACGACCAATTGAACTATTCAAACAACTGGAAGCTTTGTATCCTGATGTGTATAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGAATGTTTGGAGTTTATCAAGGGGCAAGTAATCATGAGGAATTGCACAATTTGATGAAGGCAACAACGATGATTCGGAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCTTAGACTTGGCCGACAAGGACATGAAGCAAATTAATGCTCTATTTCGTGAGTTGGAGAGGGTAAAGGCCAAAATTAAGGCAGCTAAGTCACAAGAGGAGGCTGAATCACTCAAGTTTTCTAAACAGAATATGATTAACAAGCTTTATACCGATTCTGCGGAAGCCAAGATTCCAGCTGTTCTTGATTATCTTGGAACTGTAATTGAGGCAGGCTGCAAGTTTCTCATATTTGCACACCATCTACCAATGATTGATGCGATACACGAGTTTCTTCTTAAAAAAAAGGTTGCTTGCATCCGGATTGATGGAGGTACACCTTCTGGATCAAGGCAACAATTGGTTACAGAGTTTCAGGAAAAAGATACTATCAAGGCAGCAGTGCTATCTATCAAAGCTGGAGGTGTCGGGTTAACACTGACTGCTGCCAGCACAGTCATCTTTGCAGAATTGTCTTGGACTCCTGGTGATCTAATTCAGGCCGAAGACCGAGTACATAGAATTGGCCAGGAGTCCTCGGTAAATATATACTACTTGCTTGCCAATGACACAGTTGATGATATCATATGGGACACAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGCTTGATGGCCATGAGAACACCTTAAAGGTCTCAGATGATCAGCCACCATTGAGTAGCCCTGCAAAGCAAAAAACTCTTGACCATTTTGTCAGAAGATGTGACAACAGCACAGGTGGATTGGAACATCAGTCAACCCCCAAACGTCCCCGGTACTGA 2007 0.4235 MEPEDWDLSGEDLDSLERDAFQKIAQLRSHPSNPPPPPPPSRPQRVDALPQGPARPLPNNTNNAVEHSKELTKASVKFFLHSTGNIAAKFQYDQVIVAAFRRIPKSFWNAKERLWLFPLSSLSEAEKVLKDVSGYNVQVENLDPLVQRAITAATSVPDLRDRYDKIPSDVESKLLPFQRDGIRFILQHGGRAFLADEMGLGKTLQAIGVAACVQDSWPVLILAPSALRLQWASMIQQWLNIPSSDILVVLSQIGGSNRGGFNIVSSSVKSKIHLDGLFNIISYDLVPKMQSTLMESDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGMFGVYQGASNHEELHNLMKATTMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFRELERVKAKIKAAKSQEEAESLKFSKQNMINKLYTDSAEAKIPAVLDYLGTVIEAGCKFLIFAHHLPMIDAIHEFLLKKKVACIRIDGGTPSGSRQQLVTEFQEKDTIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQESSVNIYYLLANDTVDDIIWDTVQSKLENLGQMLDGHENTLKVSDDQPPLSSPAKQKTLDHFVRRCDNSTGGLEHQSTPKRPRY* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4532 668 Pfam Helicase conserved C-terminal domain 476 583 IPR001650 -
Mtr4g4532 668 MobiDBLite consensus disorder prediction 21 67 - -
Mtr4g4532 668 MobiDBLite consensus disorder prediction 649 668 - -
Mtr4g4532 668 SMART helicmild6 500 583 IPR001650 -
Mtr4g4532 668 SMART ultradead3 170 363 IPR014001 -
Mtr4g4532 668 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 475 622 IPR001650 -
Mtr4g4532 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 397 IPR027417 -
Mtr4g4532 668 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 650 - -
Mtr4g4532 668 Pfam SNF2-related domain 193 445 IPR000330 GO:0005524|GO:0140658
Mtr4g4532 668 MobiDBLite consensus disorder prediction 623 643 - -
Mtr4g4532 668 Gene3D - 148 404 IPR038718 -
Mtr4g4532 668 MobiDBLite consensus disorder prediction 30 46 - -
Mtr4g4532 668 Gene3D - 434 655 IPR027417 -
Mtr4g4532 668 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 650 IPR030101 GO:0006281|GO:0031297|GO:0036310
Mtr4g4532 668 CDD SF2_C_SNF 470 594 - -
Mtr4g4532 668 Coils Coil 416 453 - -
Mtr4g4532 668 ProSiteProfiles HARP domain profile. 68 144 IPR010003 -
Mtr4g4532 668 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 355 IPR014001 -
Mtr4g4532 668 CDD DEXHc_HARP_SMARCAL1 174 397 - -
Mtr4g4532 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 296 628 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4532 Mtr-Chr4 59367570 59377124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4532 440 614 RAD5 or RAD16-like Gene Family AT1G02670 29.444 1.01e-16 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr4g4532 SNF2_N 1.4e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4532 K14440 - gmx:100797654 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4532 4 59367570 59377124 Mtr4g4532 4 59367570 59377124 ECH
Mtr4g4532 4 59367570 59377124 Mtr4g2761 4 41326197 41327415 PCT