Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4527 ATGGATGAAGACGGTGCAAGTATTCAACCAGTTGTAGATTCTGGCAGCAAGCAAGATTCAGAAAAGAAAAAGGCTAAAGATGAAACCACCAATACAGTACCCTTATACAAGCTTTTCTCATTTGCTGATTCTTTGGATCATTTATTGATGTTTGTTGGGACTGTTGGTGCTATTGGGAATGGAATCTCAATGCCCTTGATGACTTTAATATTTGGAAATATGATCAATGCATTTGGTGGATCATCAAGCACAGAGGAAGTAGTTGATGAAGTTTCCAAGGTGTCCTTGAAATTCGTATACTTGGCTGCGGGTACCTTCGTTGCGTCTCTTTTACAGTTGACTTGCTGGATGATTACCGGTGAGAGACAGGCTGCAAGAATCAGAAGCTTATACCTCCAAACAATTTTGAGGCAAGATGTGAGTTTCTTTGATAAGGAAACTAATACTGGAGAGGTTGTTGGAAGAATGTCTGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTTATACAGTTAATGGCTACTTTCTTTGGAGGTTTTGTGATAGCATTCATCAAGGGATGGCTTTTAACTGTTGTCATGATGTCTTGTATTCCACTTCTTGTCTTGTCGGGTGCAATGATGAGTATGGTTATTTCAAAAGCATCATCCAGTGGACAAGCAGCTTATTCTAAAGCTGCAACTGTTGTAGAACAGACAATAGGCTCTATTAGAACTGTTGCATCGTTCACCGGAGAGAAACAGGCCATAGCTAAATATGATCAGTCCTTAATTGATGCTTACAAAACTGTAGTAAAAGAGGCACTAGCTTCTGGTTTAGGGTTTGGTTCACTCTACTTTGTTGTTATTGCTAGTTATGGTTTAGCAGTATGGTTTGGTGGAAAAATGGTAATAGAGAAAGGATATACCGGAGGGGAAGTTGTGACTATAATTTTTGCTGTATTGACTGGCTCCATGTCTCTAGGACAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCGGCATTTAAAATGTTCGAAACGATTAAAAGGAAGCCCGAAATTGATGCTTACGACACAACCGGGCGAAAGCTTGATGACATTCGTGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTTTCTCTAACAATACCAAGTGGGACTACTGTAGCTTTGGTAGGGCAAAGTGGGAGTGGAAAATCCACAGTTGTCAGTTTGATAGAGAGATTTTATGATCCACAGGCTGGTGAAGTTCTCATTGACGGTGTCAACCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGCCAGGAACCTGTTCTCTTTACTTGCAGCATTAAAGAGAACATTGCATATGGCAAGGATGGTGCTACTGATGAAGAAATCAGAGCTGCAGCCGAGCTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGGGGACAAAAGCAGAGAGTTGCAATAGCAAGAGCGATTCTGAAAGATCCAAGAATATTACTTCTCGATGAAGCTACAAGTGCGCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGATAGAGTAATGGTAAACCGAACAACTGTGATTGTAGCTCACCGTTTGAGTACAATAAAGAATGCTGATACCATTGCCGTTATTCATCAAGGAAAAATAATTGAAAGAGGTTCACATGCTCAGCTCACAAGGGATCCTGATGGAGCCTATAGGCAGCTTATTAGGCTGCAAGAAATGAGGGGGTCAGAACAGAATGTTACCAATGACAAAAACAAGTCAAACAGTATAGTGCTATCTGAAAGACGATCGAGTCAAAGATCTCTCTCCTCAAGGTCTTTAAGCCAAGTGTCATCTGGAGGTGGGAACAGCGGTCGTCACTCATTCTCAGCATCACATGTTGTGCCAACTGTACCAGTTGGCTTCTCAGAAATTGCAGATGGTGGACCACAAGTTCCTCCTTCAACGGTTTCTTCACCACCAGAAGTTCCACTTTATCGCCTGGCCTATTTAAACAAGCCCGAGATTCCTGTCTTACTTATAGGAACTATAGCTGCAGTGTTGCATGGTGTAATATTACCAATTTTTGGCCTCTTGCTTTCGAAAATGATTAGTATTTTCTACGAGCCAGCTGACGAACTTCGTCACGATTCAAAAGTTTGGGCGCTAGTATTTGTTGGGCTCGCTGTGGCATCGTTATTCATTTTTCCATGTAGATTCTACTTTTTTGGCATTGCTGGAGGTAAGTTGATCAAAAGGATCCGGAAAATGTGTTTTGAGAAGGTAGTTCATATGGAAGTGAGCTGGTTTGATGAAGCTGAGCATTCAAGTGGCGCAATTGGAGCAAGGCTCTCTACAGATGCAGCTTCAGTTCGAGCTTTGGTTGGTGATGCACTCGGTTTGCTGGTTGAAAATATTGCAACAGCTATAGCTGGCTTGGTAATTGCTTTTACAGCTAGCTGGCAGCTTGCACTTATAATCCTTGCTTTGGTGCCTCTACTAGGACTTAATGGATTTTTGCAAGTGAAATTCTTGAAAGGGTTCAGCAATGATTCAAAGAAGTTGTATGAGGAAGCAAGTCAAGTGGCGAATGATGCAGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTTCTGAAGAGAAGGTGATGGAATTATATAAGCAAAAATGTGAGGGACCGATTAAGACAGGCATAAGGAGAGGGATAGTAAGCGGATTTGGTTTCGGGATATCATTCTTTGTGTTGTATTCAGTTTATGCATTAAGTTTTTATGCTGGAGCGCGTCTCGTTGAGGATGGAAAATCTTCATTCTCAGATGTTTTCCGTGTCTTTTTCGCTCTAAGTATGGCAGCTATAGGACTATCTCAATCCGGGTCATTGTTACCTGACTCAACTAAGGCGAAAAGTGCAGTTGCTTCCATATTTGCTATTCTTGATAGGAAGTCACTCATAGATCCAACTGATGAATCAGGAATTACATTGGAAGAAGTCAAGGGAGAAATTGAGTTTAAGCATGTCAATTTCAAGTATCCTACTAGACCTGATATTCAAATATTCAGAGATCTTTGCTTGAACATTCACAGTGGCAAGACAGTTGCACTTGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGATACAAAGATTTTATGATCCAGATTCAGGCCACATTACACTCGATGGAAAAGAAATCCAAAGTCTTCAAGTGAAATGGCTAAGACAACAAATGGGACTGGTAAGCCAAGAGCCTGTGCTGTTTAATGACACCATCAGAGCCAATATTGCATATGGTAAAGGAGGAGATGCATCAGAGGCAGAGATTATAGCTGCAGCAGAATTAGCAAATGCTCACAAGTTTATTAGTAGTTTGCAAAAGGGTTATGATACAGTAGTAGGAGAGAGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGTGTGGCAATTGCGAGAGCTATAGTGAAGAATCCAAAAATACTATTACTAGATGAAGCAACTAGTGCACTTGATGCTGAGTCTGAGAAGGTGGTACAAGATGCACTTGACCGTGTAATGGTGGAGCGAACGACAATAATAGTGGCGCATAGGTTATCGACTATCAAAGGTGCAGATTTAATAGCAGTAGTTAAGAATGGTGTGATAGCAGAGAAAGGAAAACATGAAGCATTGCTCCATAAGGGTGGTGACTATGCTTCTTTAGTAGCATTACACACAAGTGCTTCTACATCTTAG 3837 0.4139 MDEDGASIQPVVDSGSKQDSEKKKAKDETTNTVPLYKLFSFADSLDHLLMFVGTVGAIGNGISMPLMTLIFGNMINAFGGSSSTEEVVDEVSKVSLKFVYLAAGTFVASLLQLTCWMITGERQAARIRSLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLMATFFGGFVIAFIKGWLLTVVMMSCIPLLVLSGAMMSMVISKASSSGQAAYSKAATVVEQTIGSIRTVASFTGEKQAIAKYDQSLIDAYKTVVKEALASGLGFGSLYFVVIASYGLAVWFGGKMVIEKGYTGGEVVTIIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRKLDDIRGDIELREVCFSYPTRPDELIFNGFSLTIPSGTTVALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGVNLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRVMVNRTTVIVAHRLSTIKNADTIAVIHQGKIIERGSHAQLTRDPDGAYRQLIRLQEMRGSEQNVTNDKNKSNSIVLSERRSSQRSLSSRSLSQVSSGGGNSGRHSFSASHVVPTVPVGFSEIADGGPQVPPSTVSSPPEVPLYRLAYLNKPEIPVLLIGTIAAVLHGVILPIFGLLLSKMISIFYEPADELRHDSKVWALVFVGLAVASLFIFPCRFYFFGIAGGKLIKRIRKMCFEKVVHMEVSWFDEAEHSSGAIGARLSTDAASVRALVGDALGLLVENIATAIAGLVIAFTASWQLALIILALVPLLGLNGFLQVKFLKGFSNDSKKLYEEASQVANDAVGSIRTVASFCSEEKVMELYKQKCEGPIKTGIRRGIVSGFGFGISFFVLYSVYALSFYAGARLVEDGKSSFSDVFRVFFALSMAAIGLSQSGSLLPDSTKAKSAVASIFAILDRKSLIDPTDESGITLEEVKGEIEFKHVNFKYPTRPDIQIFRDLCLNIHSGKTVALVGESGSGKSTVISLIQRFYDPDSGHITLDGKEIQSLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDASEAEIIAAAELANAHKFISSLQKGYDTVVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLHKGGDYASLVALHTSASTS* 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4527 1278 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 609 IPR003439 GO:0005524
Mtr4g4527 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 611 IPR027417 -
Mtr4g4527 1278 SMART AAA_5 400 593 IPR003593 -
Mtr4g4527 1278 SMART AAA_5 1061 1254 IPR003593 -
Mtr4g4527 1278 CDD ABC_6TM_Pgp_ABCB1_D2_like 702 1017 - -
Mtr4g4527 1278 CDD ABC_MTABC3_MDL1_MDL2 373 611 - -
Mtr4g4527 1278 CDD ABC_6TM_Pgp_ABCB1_D1_like 50 334 - -
Mtr4g4527 1278 Gene3D - 1024 1277 IPR027417 -
Mtr4g4527 1278 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1034 1271 IPR003439 GO:0005524
Mtr4g4527 1278 Pfam ABC transporter transmembrane region 50 324 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr4g4527 1278 Pfam ABC transporter transmembrane region 712 982 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr4g4527 1278 MobiDBLite consensus disorder prediction 614 663 - -
Mtr4g4527 1278 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 18 1274 - -
Mtr4g4527 1278 CDD ABC_MTABC3_MDL1_MDL2 1034 1269 - -
Mtr4g4527 1278 Gene3D ABC transporter type 1, transmembrane domain 96 944 IPR036640 GO:0005524|GO:0016021
Mtr4g4527 1278 ProSitePatterns ABC transporters family signature. 512 526 IPR017871 GO:0005524
Mtr4g4527 1278 SUPERFAMILY ABC transporter transmembrane region 37 357 IPR036640 GO:0005524|GO:0016021
Mtr4g4527 1278 ProSitePatterns ABC transporters family signature. 1174 1188 IPR017871 GO:0005524
Mtr4g4527 1278 MobiDBLite consensus disorder prediction 1 26 - -
Mtr4g4527 1278 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 713 999 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr4g4527 1278 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 51 338 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr4g4527 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1023 1271 IPR027417 -
Mtr4g4527 1278 Pfam ABC transporter 1054 1202 IPR003439 GO:0005524
Mtr4g4527 1278 Pfam ABC transporter 392 540 IPR003439 GO:0005524
Mtr4g4527 1278 Gene3D - 371 641 IPR027417 -
Mtr4g4527 1278 PANTHER - 18 1274 - -
Mtr4g4527 1278 SUPERFAMILY ABC transporter transmembrane region 700 1018 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4527 Mtr-Chr4 59320194 59326385 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4527 1 1272 Calmodulin-binding Proteins AT2G36910 45.069 0.0 1091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4527 4 59320194 59326385 Mtr4g4527 4 59320194 59326385 ECH