Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4524 ATGGCAACGGATATCAGGTTGGAAGGCGATTTTGTGAGTGTTCAACCAGTTGAAGATCATGACAGCAATCAAGATTCAGAGAAGAGCAAGGACAAAGATGTAACCACCAAAACAGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTCGGATCGTTTATTGATGCTTATGGGGACTTTGGGTGCTATTGGGAATGGACTCTCTATACCCTTGATGATTTTAATATTTGGAACTATGATCAATGCATTTGGAGATTCCACAAACTCAAAAGTTGTTGATGAAGTCTCTGAGGTGTCTCTGAAATTTGTATACTTGGCTGCGGGTACCTTTGTTGCGTCATTTTTGCAATTAACTTGCTGGATGATCACCGGGGAGAGACAGAGTGCAAGAATTAGAGGGTTATATCTTAAAACAATTTTGAGGCAAGATGTGAGTTTCTTTGATAAGGAAACTAATACGGGAGAGGTTGTTGGAAGAATGTCAGGTGATACTGTTCTTATTAAGGATGCCATGGGTGAGAAGGTGGGACAGTTCATACAGTTTATGTCAACTTTCATAGGAGGTTTTGTCATAGCATTCACAAAAGGATGGCTTCTAACTGTTGTCATGCTATCTAGTATACCACTTCTTATCTTGTCTGGTTCTATGACGAGTATGGTTATTGCAAAAGCATCATCAACTGGACAAGCAGCTTATTCTAAATCAGCAGGTGTAGTAGAGCAGACAATAGGTTCCATTCGAACTGTTGCATCGTTCACCGGGGAGAAACAAGCTACAGCTAATTATAATCGATCCTTAATCAAAGTCTACAAGACTGCAGTGCAAGAGGCACTGGCATCTGGTGTTGGGTTTGGTACACTCTTTTTTGTTTTTATCTGCAGTTATGGTTTGGCTGTATGGTTTGGTGGGAAAATGATAATTGAGAAAGGATACACAGGAGGGGACGTTATGACTGTAATTTTTGCTGTATTGATTGGTTCAACGTGTCTTGGGCAGACATCTCCAAGCCTAAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTCGAAACGATTAATAGGAAGCCGGAAATTGATGCCTATGACACTAGTGGGAAAAAACTTGATGACATTCGTGGAGACATAGAGCTCAGGGATGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTTTCTCTTTCATTACCAAGCGGCACTACTGCAGCTTTGGTAGGGCAAAGTGGAAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTCTATGATCCAACAGATGGTGAAGTTCTCATTGACGGTATCAACCTCAAAGAATTTCAACTAAAATGGATCAGACAGAAAATAGGCCTAGTCAGCCAGGAACCCGTTCTCTTTACTTGTAGCATTAAGGAGAATATTGCATATGGCAAGGACTGTGCAACTGATGAAGAAATCAGAGTTGCAGCAGAACTTGCTAATGCTGCTAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACGCAGCTCTCTGGAGGTCAAAAGCAGAGAGTTGCAATTGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAGAGAATTGTACAAGAGGCATTGAACAGAATAATGATAAACCGGACGACTATCGTTGTAGCACACCGCTTGAGCACTATAAGAAATGTTGATACAATTGCTGTCATTCATCAAGGAAAAATAGTTGAAAGAGGTTCACATGCTGAGCTCACCAATGATCCCAATGGAGCCTATAGTCAGCTTATTAGACTGCAAGAAATGAAGAGGTCAGAGCAAAATGATGCAAATGACAAAAACAAGCCAAACAGTATAGTGCATTCTGGAAGACAATCGAGTCAGAGATCTTTTTCCTTAAGATCAATAAGCCAAGGGTCAGCTGGAAACAGCGGTCGTCACTCTTTCTCAGCATCTTATGTTGCACCCACAACAGATGGATTCTTAGAAACTGAAGATGGGGGACCTCAAGCGTCTCCTTCAAAAAATTCTTCACCACCAGAAGTGCCACTTTATCGCCTGGCATATTTTAACAAGCCTGAGATTCCAGTCTTATTGATGGGGACTATAACTGCAGTGCTGCATGGAGCAATAATGCCCGTTATTGGGCTCTTAGTTTCTAAAATGATAAGTACTTTCTACAAACCAGCTGATGAACTTCGTCATGATTCAAAAGTTTGGGCAATAGTGTTTGTAGCGGTTGCTGTGGCATCATTACTCATTATTCCATGTAGATTCTACTTTTTTGGCGTTGCTGGAGGTAAGTTGATCCAAAGGATCCGAAAATTGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGACGATGTTGAGCATTCAAGCGGAGCACTTGGAGCAAGGCTCTCCACTGATGCAGCATCAGTTAGAGCTCTAGTTGGGGATGCCCTTGGTTTGCTGGTTCAAAATATTGCTACAATAATAGTTGGCATGGTAATTGCTTTTCAAGCGAGCTGGCAACTTGCTTTTATAGTCCTTGCTTTGGCGCCTCTATTAGGCCTAAATGGATATGTGCAAGTAAAGGTCTTGAAAGGATTCAGCGCAGATGCAAAGAAATTGTACGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACTGTTTCCTCTTTTTGTGCTGAGGAGAAGGTGATGGAATTATATAAGCAAAAATGCGAGGGGCCAATTAAGAAAGGCGTAAGGCGAGGGATAATAAGTGGATTAGGTTTTGGATCATCATTCTTCATGTTGTATGCAGTTGATGCCTGCGTTTTTTATGCTGGAGCTCGACTTGTAGAGGATGGCAAATCTACATTCTCAGATGTTTTCCTTGTCTTTTTTGCTCTTAGCATGGCAGCTATGGGAGTCTCCCAATCTGGGACCTTGGTCCCTGATTCAACTAATGCAAAAAGTGCTGCTGCTTCCATATTTGCTATTCTTGATCAGAAGTCACAAATAGACTCTAGTGATGAATCTGGCATGACACTGGAAGAAGTCAAGGGAGATATTGAGTTTAACCATGTTAGTTTCAAGTATCCTACTAGACTTGATGTTCAAATATTCAATGATCTTTGCTTGAACATTCGCAGTGGAAAGACAGTTGCACTCGTAGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCGTTACTACAAAGATTCTATGACCCTGACTCAGGGCACATTACTCTTGATGGAATAGAAATTCAAAGGATGCAAGTGAAATGGCTAAGACAACAGATGGGACTGGTAAGCCAAGAGCCTATTCTTTTCAATGACACGGTTCGGGCGAATATTGCATACGGAAAAGGAGGAGATGCAACAGAGGCAGAAATTGTAGCTGCGGCAGAACTAGCAAATGCTCACCAGTTCATTGGTAGTTTGCAGAAGGGCTATGACACGATAGTAGGTGAGAGAGGAATTCAATTATCTGGGGGACAGAAGCAGCGTGTGGCAATTGCGAGAGCTATAGTGAAGAATCCAAAAATACTATTACTAGATGAAGCAACTAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTACAAGATGCACTTGACCGTGTAATGGTGGAGCGAACGACAATAATAGTGGCGCATAGGTTATCGACTATCAAAGGTGCAGATTTAATAGCAGTAGTTAAGAATGGTGTGATAGCAGAGAAAGGAAAACATGAAGCATTGCTCCATAAGGGTGGTGACTATGCTTCTTTAGTAGCATTACATACAAGTGATTCTACATCTTAG 3843 0.4137 MATDIRLEGDFVSVQPVEDHDSNQDSEKSKDKDVTTKTVPLYKLFSFADPSDRLLMLMGTLGAIGNGLSIPLMILIFGTMINAFGDSTNSKVVDEVSEVSLKFVYLAAGTFVASFLQLTCWMITGERQSARIRGLYLKTILRQDVSFFDKETNTGEVVGRMSGDTVLIKDAMGEKVGQFIQFMSTFIGGFVIAFTKGWLLTVVMLSSIPLLILSGSMTSMVIAKASSTGQAAYSKSAGVVEQTIGSIRTVASFTGEKQATANYNRSLIKVYKTAVQEALASGVGFGTLFFVFICSYGLAVWFGGKMIIEKGYTGGDVMTVIFAVLIGSTCLGQTSPSLSAFAAGQAAAFKMFETINRKPEIDAYDTSGKKLDDIRGDIELRDVCFSYPTRPDELIFNGFSLSLPSGTTAALVGQSGSGKSTVVSLIERFYDPTDGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDCATDEEIRVAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALNRIMINRTTIVVAHRLSTIRNVDTIAVIHQGKIVERGSHAELTNDPNGAYSQLIRLQEMKRSEQNDANDKNKPNSIVHSGRQSSQRSFSLRSISQGSAGNSGRHSFSASYVAPTTDGFLETEDGGPQASPSKNSSPPEVPLYRLAYFNKPEIPVLLMGTITAVLHGAIMPVIGLLVSKMISTFYKPADELRHDSKVWAIVFVAVAVASLLIIPCRFYFFGVAGGKLIQRIRKLCFEKVVHMEVSWFDDVEHSSGALGARLSTDAASVRALVGDALGLLVQNIATIIVGMVIAFQASWQLAFIVLALAPLLGLNGYVQVKVLKGFSADAKKLYEEASQVANDAVGSIRTVSSFCAEEKVMELYKQKCEGPIKKGVRRGIISGLGFGSSFFMLYAVDACVFYAGARLVEDGKSTFSDVFLVFFALSMAAMGVSQSGTLVPDSTNAKSAAASIFAILDQKSQIDSSDESGMTLEEVKGDIEFNHVSFKYPTRLDVQIFNDLCLNIRSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGIEIQRMQVKWLRQQMGLVSQEPILFNDTVRANIAYGKGGDATEAEIVAAAELANAHQFIGSLQKGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLHKGGDYASLVALHTSDSTS* 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4524 1280 MobiDBLite consensus disorder prediction 676 695 - -
Mtr4g4524 1280 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 339 - -
Mtr4g4524 1280 Pfam ABC transporter transmembrane region 56 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr4g4524 1280 Pfam ABC transporter transmembrane region 714 986 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr4g4524 1280 Gene3D - 1026 1279 IPR027417 -
Mtr4g4524 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 616 IPR027417 -
Mtr4g4524 1280 ProSitePatterns ABC transporters family signature. 1176 1190 IPR017871 GO:0005524
Mtr4g4524 1280 MobiDBLite consensus disorder prediction 628 665 - -
Mtr4g4524 1280 ProSitePatterns ABC transporters family signature. 517 531 IPR017871 GO:0005524
Mtr4g4524 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1273 IPR027417 -
Mtr4g4524 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 614 IPR003439 GO:0005524
Mtr4g4524 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1036 1273 IPR003439 GO:0005524
Mtr4g4524 1280 SUPERFAMILY ABC transporter transmembrane region 37 362 IPR036640 GO:0005524|GO:0016021
Mtr4g4524 1280 MobiDBLite consensus disorder prediction 621 665 - -
Mtr4g4524 1280 Gene3D ABC transporter type 1, transmembrane domain 101 1010 IPR036640 GO:0005524|GO:0016021
Mtr4g4524 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 715 1001 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr4g4524 1280 PANTHER - 17 1276 - -
Mtr4g4524 1280 Pfam ABC transporter 1055 1204 IPR003439 GO:0005524
Mtr4g4524 1280 Pfam ABC transporter 397 545 IPR003439 GO:0005524
Mtr4g4524 1280 CDD ABC_MTABC3_MDL1_MDL2 378 616 - -
Mtr4g4524 1280 Gene3D - 376 629 IPR027417 -
Mtr4g4524 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 343 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr4g4524 1280 CDD ABC_6TM_Pgp_ABCB1_D2_like 704 1019 - -
Mtr4g4524 1280 SUPERFAMILY ABC transporter transmembrane region 702 1016 IPR036640 GO:0005524|GO:0016021
Mtr4g4524 1280 CDD ABC_MTABC3_MDL1_MDL2 1036 1271 - -
Mtr4g4524 1280 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 17 1276 - -
Mtr4g4524 1280 SMART AAA_5 1063 1256 IPR003593 -
Mtr4g4524 1280 SMART AAA_5 405 591 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4524 Mtr-Chr4 59266696 59273153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4524 23 622 Calmodulin-binding Proteins AT2G36910 36.755 1.50e-115 390