Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4494 ATGGATGTAAAAGGAAGAGGAAGCAACAACAAAAACAACCTTATGAGTAGTGATGAGGATGATATGGACCTTAGAAGAGGTCCTTGGACCGTGGATGAGGACTTAACCCTCATGAATTACATTGCTACTCATGGTGAAGGTCGTTGGAATACCCTCGCCAACTCTGCTGGTCTCAAGCGAACGGGAAAGAGTTGCAGATTGAGGTGGCTTAATTATCTCCGTCCAGATGTCAGACGTGGAAATATCACACTTGAAGAACAACTTTTGATTCTCGAGCTCCATACTCGTTGGGGTAACCGATGGTCGAAAATAGCCCAATATTTACCAGGAAGAACGGACAATGAAATAAAAAATTATTGGAGAACTCGTGTTCAAAAGCTTGCCAAACAACTCAAATGCGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGGCTAGTCGAACGTATTCAAGCCGCCGCTGCTGCCACTACCACCACCACCCACAATACCACAATGACATACTTCATGAATTTATCGAGTTCACAACCACATATGACAGCAAAGTTTCAACTCCAACAATTATAAACTATGAATTTATGAGTTCACAACCACCATATGACACAAAGTTATACCCTAGAGAACAGCAACACAACTGCATCATCAGATTCATTTGAGAATAAGGTGTCAACATTATCGGATTTGGGTGATAATAATTATTATTGTACAAGTGTTAGTAATAAGAATAACCCTAATGCTAATTCAAATTATTATCAACCTTCTCATCAACTTAGCTTCTCGGATTGTATCACAAGCCCGTCTGGATTGTTTTCTCAAGGATTAATGGATTTCCAATCCATGGAGCCAAACACCACGTGGATGCAAAGTGGGGACTCATCTGACATTTTTTGGAATGCTGAGAACATGTTGTTTTTACAGCAACAACTCATGAACGATACAATGTAA 963 0.406 MDVKGRGSNNKNNLMSSDEDDMDLRRGPWTVDEDLTLMNYIATHGEGRWNTLANSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAAATTTTTHNTTMTYFMNLSSSQPHMTAKFQLQQL*TMNL*VHNHHMTQSYTLENSNTTASSDSFENKVSTLSDLGDNNYYCTSVSNKNNPNANSNYYQPSHQLSFSDCITSPSGLFSQGLMDFQSMEPNTTWMQSGDSSDIFWNAENMLFLQQQLMNDTM* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4494 318 MobiDBLite consensus disorder prediction 1 15 - -
Mtr4g4494 318 CDD SANT 28 73 IPR001005 -
Mtr4g4494 318 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Mtr4g4494 318 SMART sant 78 126 IPR001005 -
Mtr4g4494 318 SMART sant 25 75 IPR001005 -
Mtr4g4494 318 CDD SANT 99 122 IPR001005 -
Mtr4g4494 318 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Mtr4g4494 318 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Mtr4g4494 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Mtr4g4494 318 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 313 IPR044676 GO:0003700|GO:0006355|GO:0043565
Mtr4g4494 318 MobiDBLite consensus disorder prediction 1 21 - -
Mtr4g4494 318 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Mtr4g4494 318 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Mtr4g4494 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Mtr4g4494 318 Gene3D - 83 146 - -
Mtr4g4494 318 PANTHER MYB TRANSCRIPTION FACTOR 1 313 - -
Mtr4g4494 318 Gene3D - 26 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4494 Mtr-Chr4 58896693 58898744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4494 1 302 MYB Transcription Factor Family AT3G06490 54.088 8.25e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g4494 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4494 K09422 - gmx:100791349 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4494 4 58896693 58898744 Mtr4g4494 4 58896693 58898744 ECH