Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4471 ATGAACTACAACCACCGTCGAAGTCCTGGTGGTTTCCGCCCCGCCCCTCTCCACCGTAGCAACTTTGATAGTCCCCCACGGTGGTCTCCGGGTAGGGTTGGAGGTGGTCTCCGTCCTCCACCTGCCGGAGATGGCTTCAGACCGGTGGGCGGTGATGAATTTGGATTCAACCTGCCACCACCGCCGTTGTCTGGTCAGAAACGTGGGTTTCCGTTCTCTGGTCGTGGTGCTTCACCGGATCATTCTGATGGTGGAAATTTTGCCAAACTTTTTGTTGGGTCTGTTCCCCGAACAGCAACTGAGGAAGATATCCGTCCTTTGTTTGAGGAACACGGGAATGTGGTTGAGGTCGCCCTGATCAAAGATAGAAAAACAGGACAGCATCAAGGTTGTTGTTTTATAAAATATGCTACCTCAGAGGAAGCTGATCAGGCAATTAGAGCATTGCACAATCGACATACTCTTCCCGGAGGTGTTGGTCCCATCCAAGTGCGGTATGCTGATGGCGAACGAGAACGCCTTGGTGCAGTTGAGTACAAACTATTCGTGGGCTCTCTGAACAAACAGGCCAGTGTAAAGGAAGTCGAGGAAGTTTTCTCAAAATATGGACGGATTGAAGATGTTTATCTTATGCGTGATGACCAGAAGCAGAGTCGTGGATGCGGTTTTGTCAAATACTCTCATAGAGATATGGCACTGGCAGCTATTAATGCACTTAATGGAATATATACAATGAGAGGTTGTGAACAACCACTGATTGTCCGGTTCGCTGATCCTAAGAGACCTCGTCAAGGAGATTCCAGGGGTCCTGCATTTGGATCTGCAGGATTTGGTCCAAGATTGGATTCACCAGGCACTAGACTTCCATCAAATAATTCTGATCCTATGGGTGATCATATTCCTCCCCCTAATGCTTGGCGTCCAATCCCTCAACCAAATACTGGGACATCCTTCAATGCTGGTTTTCATGGCATGGGGCCTCCATTGATTCCAAGATCCGGGGACATGGCATTGCCTATAAATGCAGGTGGTCCTATGACTGGCATGGGAGTCTCCATAGATGGTCGTTTTCAAACTCAGTCTCCGTCAGCAATGCCGCAACAGAATTTCAACCAGCCTCAACCACAAATTCCACCGGTCAATCAACAAATACCTCCATCACAGAAACCTATTCAATCATCTCAGGAGTTTCCACCTTCACACCAGTTATATCCTCAAGCTCCGATTCCCTATCCACAAACATCCACACGTCCATCTTTCAGGCAGCATGGTCAGCCACAACCTCTCCCTGCTGGTCCACAGGGACTGGGCATAAATGCACAGTTTTCAGTTTCTCAGCCTCAAAGTCAGCAGGGTGTTTTGTCTGCTACATTTCCTCAGACCTCTCTTGATACCAGCATGCAATCTAATACCGCATTGACTACTCCAAGTCAACAGCAAATTCCTCCTTCTATGCAGCAGCAGCAACATCCACTTCAACCTCTTCCACAATCCCCTTCTCAGTTAGCTCAATTGTTGTCACAACAAACACAGACGTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAACCATCCAGTCAAGCATCGCCATTGCAGCATCATGCAGAAGCTACTAAAACACAGTCTCAATGGGGTGGGACTGTATCGCAAGCAGCGACCGGCACTCATGTAGCTGCACCTGCTGCAGGTGTTCCTTCATCAACACCTGCTACTTCTTCTGTACAACCAATAAGCCAGAACACAACTCTTGGAAATTGTAATTGGACAGAGCATCTATCTCCCGAGGGCTTCAAATACTACTATAATAGTGTAACTGGGGAAAGTCGGTGGGAGAAACCCGAAGAGTTGACATCATCTGAACAGCAAAAACAACTGCTCAATCAGTCTGTTCAGCAGTCTCAAATTCAGGGACAGCCTTCAATACCACCCACCCAGCAAGTTGCACAAAACCAACAGGTTCAGCCTCAAAGTCATTTTCGAGGACAAGTTCACCATCAACAAATACAGCAGCCTTCGTCGTTCCAGGCATATGGAGTTACAGGTCATCAAAATGTTCAGGAACTTGGCTATAAACAGTCACAGACATCATTTGTTTCTGCCGGTGATCCTGGACGTTATTCACAGGGTATCAATAATACACAAGAGCTGATGTGGAAAAACAGGCCTACAGGAGTCTGA 2214 0.4747 MNYNHRRSPGGFRPAPLHRSNFDSPPRWSPGRVGGGLRPPPAGDGFRPVGGDEFGFNLPPPPLSGQKRGFPFSGRGASPDHSDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNRHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGPAFGSAGFGPRLDSPGTRLPSNNSDPMGDHIPPPNAWRPIPQPNTGTSFNAGFHGMGPPLIPRSGDMALPINAGGPMTGMGVSIDGRFQTQSPSAMPQQNFNQPQPQIPPVNQQIPPSQKPIQSSQEFPPSHQLYPQAPIPYPQTSTRPSFRQHGQPQPLPAGPQGLGINAQFSVSQPQSQQGVLSATFPQTSLDTSMQSNTALTTPSQQQIPPSMQQQQHPLQPLPQSPSQLAQLLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQASPLQHHAEATKTQSQWGGTVSQAATGTHVAAPAAGVPSSTPATSSVQPISQNTTLGNCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTSSEQQKQLLNQSVQQSQIQGQPSIPPTQQVAQNQQVQPQSHFRGQVHHQQIQQPSSFQAYGVTGHQNVQELGYKQSQTSFVSAGDPGRYSQGINNTQELMWKNRPTGV* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4471 737 MobiDBLite consensus disorder prediction 571 597 - -
Mtr4g4471 737 Pfam WW domain 599 625 IPR001202 GO:0005515
Mtr4g4471 737 MobiDBLite consensus disorder prediction 438 498 - -
Mtr4g4471 737 ProSitePatterns WW/rsp5/WWP domain signature. 600 625 IPR001202 GO:0005515
Mtr4g4471 737 Gene3D - 579 648 - -
Mtr4g4471 737 SMART rrm1_1 89 165 IPR000504 GO:0003723
Mtr4g4471 737 SMART rrm1_1 180 255 IPR000504 GO:0003723
Mtr4g4471 737 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 47 669 - -
Mtr4g4471 737 MobiDBLite consensus disorder prediction 623 655 - -
Mtr4g4471 737 MobiDBLite consensus disorder prediction 259 317 - -
Mtr4g4471 737 SUPERFAMILY WW domain 599 630 IPR036020 GO:0005515
Mtr4g4471 737 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 169 IPR000504 GO:0003723
Mtr4g4471 737 SUPERFAMILY RNA-binding domain, RBD 179 278 IPR035979 GO:0003676
Mtr4g4471 737 PANTHER RNA BINDING PROTEIN 47 669 - -
Mtr4g4471 737 SUPERFAMILY RNA-binding domain, RBD 72 173 IPR035979 GO:0003676
Mtr4g4471 737 MobiDBLite consensus disorder prediction 347 498 - -
Mtr4g4471 737 MobiDBLite consensus disorder prediction 527 558 - -
Mtr4g4471 737 Gene3D - 79 175 IPR012677 -
Mtr4g4471 737 SMART ww_5 595 627 IPR001202 GO:0005515
Mtr4g4471 737 ProSiteProfiles WW/rsp5/WWP domain profile. 600 627 IPR001202 GO:0005515
Mtr4g4471 737 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 248 IPR000504 GO:0003723
Mtr4g4471 737 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 153 IPR000504 GO:0003723
Mtr4g4471 737 Gene3D - 176 267 IPR012677 -
Mtr4g4471 737 CDD WW 597 627 IPR001202 GO:0005515
Mtr4g4471 737 MobiDBLite consensus disorder prediction 386 423 - -
Mtr4g4471 737 CDD RRM2_FCA 180 259 IPR034645 -
Mtr4g4471 737 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 259 IPR000504 GO:0003723
Mtr4g4471 737 MobiDBLite consensus disorder prediction 631 655 - -
Mtr4g4471 737 MobiDBLite consensus disorder prediction 1 49 - -
Mtr4g4471 737 MobiDBLite consensus disorder prediction 353 377 - -
Mtr4g4471 737 MobiDBLite consensus disorder prediction 577 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4471 Mtr-Chr4 58699929 58711082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4471 87 265 Eukaryotic Initiation Factors Gene Family AT1G71770 25.641 2.01e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4471 - - gmx:100798390 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4471 4 58699929 58711082 Mtr4g4471 4 58699929 58711082 ECH