Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr4g4464 | ATGGATCCAGAAAATCCTGCATCAACTCCCGATTCACCAACTTCACCATCCGCCGGTTTCAACACTGATCAACTTCCTCACACTCACACCAGCCGCGCATCTGAAGACGACGAAGCTTCCGTTGATCCCGATATCATTCGCGATGAACCCGATCCAGAGGAAGAGGAAGATGGAGAAGATCTCTACAATGATAACTTTCTCGATGATTATCAGAGGATGGGTGAAGCCGATCAGTTCGAATCGGTTGGGTTGGATGATTCGGTTGAGGATGAGAGAGATTTTGATCAGATCATGGAGGATCGTAGAGCTGCTGAGATTGAACTTGATACTCGCGATGGCCGCGCTTCCAATCGCTCTAAACTTCCTCAGCTTCTCCATGACGGAGATACGGATGATGACAGTTACAGGCCCTCTAAAAGGGCTAGAGCTGATCACAGGTCTTCTGCACCGAGTGACGATGATCTTGATGGGATGAATAGTTCACCTGGAAGGTCACAAAGACACTCAAGGGAGGATAATCCAACCACTGATCAAAATGAGGATGATCAATATGAGGAGGATTTTGATGATGAAGCTGGGTATGAGATGTACCGTGTTCAAGGAACTCTTAGAGAATGGGTTACAAGAGATGAAGTGCGCCGTTTCATAGCCAGGAAGTTCAAGGATTTCTTACTCTCTTACGTCAATCCAAAGAATGAACATGGAGACTTTGAATATGTGCGTCTGATAAGTGAAATGGTGTCAGCTAACAAGTGCAGTTTGGAGATAGATTACAAGCAATTTATCTATGTCCATCCCAACATTGCCATTTGGCTGGCTGATGCACCTCATTCTGTTTTAGAAGTAATGGAAGATGTTGCTAAAAGTGTTGTCTTTAACTTGCATGCCAATTACAAACATATACATCAAAAGATATATGTTCGCATTACCAACTTACCGGTTTATGACCAGATTCGAAATATCAGGCAGATCCATTTGAATACAATGATTCGAATTGGGGGAGTTGTAACCAGGCGTTCCGGAGTTTTCCCCCAGTTGCAACAGGTGAAGTATGACTGTGGCAAATGTGGGGCAGTTTTGGGACCCTTTTTTCAGAATTCCTATTCAGAGGTGAAAGTTGGTTCCTGTCCTGAGTGTCAATCGAAAGGACCGTTCACTGTCAATATTGAACAGACAATTTACAGGAATTTTCAAAAGCTCACTCTTCAAGAGAGCCCTGGAATAGTTCCTGCAGGACGGCTGCCGAGATACAAGGAAGTGATACTATTGAATGATCTGATTGACTGTGCTCGACCTGGAGAAGAGATTGAGGTCACAGGTGTTTATACTAATAACTTCGACTTGTCCCTGAACACAAAGAATGGTTTTCCAGTGTTTTCCACTGTTGTTGAGGCAAATTATGTTACAAAGAAGCAAGACCTCTTCTCTGCCTACAAACTTACACAGGAAGACAAAGAAGAGATTGAAAATTTGGGCAAAGACCCCCGAATTGGAGAAAGGATTATCAAGTCCATTGCTCCATCAATCTATGGTCACGATGATATTAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAGAATGTTGAAGGGAAGCATAGACTACGAGGAGACATAAATGTTCTTCTTCTCGGTGATCCAGGAACAGCAAAGTCTCAATTTCTTAAATATGTTGAAAAAACTGGACAGAGAGCTGTATACACCACTGGCAAAGGGGCTTCTGCTGTGGGTCTCACAGCTGCAGTCCACAAAGATCCAGTCACAAGGGAATGGACCCTTGAGGGGGGAGCCCTTGTTCTAGCTGACAGAGGAATTTGTCTTATTGATGAATTTGACAAGATGAATGACCAGGATCGGGTAAGTATCCATGAAGCCATGGAGCAGCAGAGCATAAGCATATCAAAAGCTGGAATTGTCACATCTCTTCAGGCACGCTGTTCTGTCATTGCTGCTGCCAATCCAATTGGAGGAAGATATGATTCATCAAAATTGTTTACTCAAAACGTTGAATTGACAGATCCTATTATTTCTCGTTTCGATATCCTCTGTGTTGTGAAGGATGTAGTTGATCCAGTCACTGATGAAATGCTTGCGAAGTTTGTTGTTGACAGTCACTTCAAGTCACAACCTAAGGGTGCTAACAATGACTCCGTGAGCGAGTCCCAAGATGCATCTGGCATGCCAATTGACCCAGAGATACTTCCTCAAGATCTGTTGAAGAAGTACGTTACATATGCCAAGTTGAATGTTTTCCCAAGGTTACATGATGCTGATTTGAATAAACTGTCACATGTATATGCAGAACTGCGGAAGGAATCATCACACGGACAAGGAGTCCCCATCGCTGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCCCATGCGCGAATGCATCTCAGACAGCATGTCATACAAGAGGATGTCGACATGGCAATTCGTGTACTACTTGACTCATTCATTTCTACCCAAAAGTTTGGGGTGCAGAAAGCACTGCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAAGACTATAATGATATGCTCATTTATATTCTCCGTGGGCTTGTAACCAATGCTTTGCATTTGGAAGACATTCTCACTGGATCTACATCAAGTCTAACCCATGTAGATATCAAAGTAGATGATCTCTCCTTCAAGGCTCAAGAGCATGAAATATATGATCTGACCCCCTTCTTCAACAGCAGCATCTTTTCAAATGCCAATTTTGAATTGGATAAAGAACGAGGAGTTATCAGACATTATCTCACTAGGTGA | 2790 | 0.4276 | MDPENPASTPDSPTSPSAGFNTDQLPHTHTSRASEDDEASVDPDIIRDEPDPEEEEDGEDLYNDNFLDDYQRMGEADQFESVGLDDSVEDERDFDQIMEDRRAAEIELDTRDGRASNRSKLPQLLHDGDTDDDSYRPSKRARADHRSSAPSDDDLDGMNSSPGRSQRHSREDNPTTDQNEDDQYEEDFDDEAGYEMYRVQGTLREWVTRDEVRRFIARKFKDFLLSYVNPKNEHGDFEYVRLISEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPHSVLEVMEDVAKSVVFNLHANYKHIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCGKCGAVLGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIENLGKDPRIGERIIKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKLFTQNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGANNDSVSESQDASGMPIDPEILPQDLLKKYVTYAKLNVFPRLHDADLNKLSHVYAELRKESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVIQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNDMLIYILRGLVTNALHLEDILTGSTSSLTHVDIKVDDLSFKAQEHEIYDLTPFFNSSIFSNANFELDKERGVIRHYLTR* | 930 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr4g4464 | 929 | Gene3D | - | 318 | 443 | IPR012340 | - | |
| Mtr4g4464 | 929 | MobiDBLite | consensus disorder prediction | 94 | 116 | - | - | |
| Mtr4g4464 | 929 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 139 | 923 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr4g4464 | 929 | Pfam | MCM N-terminal domain | 218 | 311 | IPR027925 | - | |
| Mtr4g4464 | 929 | ProSitePatterns | MCM family signature. | 606 | 614 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Mtr4g4464 | 929 | Gene3D | - | 210 | 314 | - | - | |
| Mtr4g4464 | 929 | MobiDBLite | consensus disorder prediction | 7 | 28 | - | - | |
| Mtr4g4464 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 538 | 553 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr4g4464 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 598 | 612 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr4g4464 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 626 | 639 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr4g4464 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 650 | 662 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr4g4464 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 677 | 685 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr4g4464 | 929 | Pfam | MCM P-loop domain | 485 | 707 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr4g4464 | 929 | SUPERFAMILY | Nucleic acid-binding proteins | 219 | 466 | IPR012340 | - | |
| Mtr4g4464 | 929 | Gene3D | - | 477 | 846 | IPR027417 | - | |
| Mtr4g4464 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 327 | 344 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Mtr4g4464 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 350 | 362 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Mtr4g4464 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 385 | 399 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Mtr4g4464 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 446 | 457 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Mtr4g4464 | 929 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 461 | 472 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Mtr4g4464 | 929 | CDD | MCM2 | 500 | 822 | - | - | |
| Mtr4g4464 | 929 | Pfam | MCM AAA-lid domain | 739 | 823 | IPR041562 | - | |
| Mtr4g4464 | 929 | MobiDBLite | consensus disorder prediction | 124 | 152 | - | - | |
| Mtr4g4464 | 929 | Gene3D | - | 345 | 395 | - | - | |
| Mtr4g4464 | 929 | SMART | mcm | 314 | 824 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr4g4464 | 929 | ProSiteProfiles | MCM family domain profile. | 497 | 703 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mtr4g4464 | 929 | Pfam | Mini-chromosome maintenance protein 2 | 36 | 191 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Mtr4g4464 | 929 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 507 | 826 | IPR027417 | - | |
| Mtr4g4464 | 929 | MobiDBLite | consensus disorder prediction | 41 | 64 | - | - | |
| Mtr4g4464 | 929 | MobiDBLite | consensus disorder prediction | 1 | 191 | - | - | |
| Mtr4g4464 | 929 | Pfam | MCM OB domain | 317 | 444 | IPR033762 | - | |
| Mtr4g4464 | 929 | PANTHER | DNA HELICASE | 139 | 923 | - | - | |
| Mtr4g4464 | 929 | MobiDBLite | consensus disorder prediction | 710 | 726 | - | - | |
| Mtr4g4464 | 929 | MobiDBLite | consensus disorder prediction | 710 | 731 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr4g4464 | Mtr-Chr4 | 58610442 | 58615891 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr4g4464 | 19 | 924 | Core DNA Replication Machinery Family | AT1G44900 | 75.301 | 0.0 | 1350 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr4g4464 | K02540 | - | gmx:100799441 | 1597.79 |