Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4458 ATGATGAGAAGTGAAGAAAGAGAGAAAGCAGTTCAGAAGAAGATCCAAGAGTTAGAAGAAGGACATGCTTACATGAAACAAGAAATGTCAAAGCTTAAACTTAGTGATGGAAGAGAACAACAACAACATCATCATCGTCAAAGGTCTCACTCTGTGTCACCTCAACGTTCTAGATTAGGTTCTTGGAACAAAGGTTCTTGTTCTTTCAAACACTCTTCACCTCTCAGAAAGGAAACTCATGCTCACGCGCTTGTTAATTTCACTGAGAAACATTATCTCAATATTTTGCATTCTTTGGGACATTCTCTTCATATTTTGGATCTTAATTCTCGTATCATTTACTGGAACCGTAGTGCGGAAAATCTATACGGTTATGCAGCAGATGAAGTTTTGGGACAGGATGGGATTGATTTGCTTGTGGACTCTAGGGATTGGGAATTAGCTTGTGATACGGTGAATTGTGTTATGAAGGGAGAGAAATGGAGTGGTCAATTCCTAGTCAAGAACAAGAAAGGAGAAAAGTTTTTAGCTGTAACAACTAATACTCCTTTTTATGATGATGGAAGTTTAGTTGGGATTATCTGTGTGTCGAGTGATTCACGGCCGTTTCTTGAAATGAGAGCTCCATTCTTTGGTGTAAAGAATGCTGAATCGGATTATGGTATTCGTCGTAGCAGTAGTGTTTCAAATAAACTTGGTTTTGATTCTCAGCAGCCACTACAAACTGCTCTAGCATCTAAAATTTCAAATTTGGCGTCGAAGATGGGTAACAAAGTCAAATCGAAGATCTGGACAGGAGAAAATAACATGGACCGTGATGGTGGGAATGGAGAAAGTCAACATTCTGATCTCGGTTTCTCAGAACACAGAGAAGATGCTAATTCAAGCGGAGCTAGCACGCCTAAAGGTGATTTGCCACAGTCCCCTGTTGGTGTATTTTATCGTGTTGAGGAAAAGTTTGAAGCAAAAACTTCGAGAGACTCTGGTGATGAGAGTGAAGGAAAACCTGTTAACAAAAGTTTACCTACTAAGCCCGAAACCTGGATTCAAAAGAAAACATCAACATGGCCGTGGAGAACAAATGATCGAGAAGAATCAGAGGCAAGGAACGTTCGTGCTGCTGAGCCGTGGAGGCAGAATGATCAAGAAAATGAGTCAGTTAATCAAAAGATTATTTCTTCTGGCTTGAAGCACGAAAACCAGGCTGGTGAAAGTAATCGCCCTACTAATAATGAGGCTTCATTATCCCGTTCTTCCTCCTATAATGTTAACAGCACAAGTAGTGCCAGCAGCTGCGGAAGTGCTGGCAGTGGTGCTGTCAGTAGTAAAGTGGACGCAGACAATGATTGCTTTGATTATGAAATTTTGTGGGAGGATTTGACAATTCGAGAACAAATTGGACAGGGTTGTTGTGGAACTGTATACCATGCTCTGTGGTATGGATCGGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAGTATTCAGATGATTTGATACTATCCTTCCGACAAGAGGTATCTGTCATGAAAAGACTTCGGCACCCAAATATTCTTCTCTTTATGGGAGCAGTGACTTCACCCCAACGTCTCTGCATCGTGACAGAGTTTCTCCCGCGCGGAAGCTTGTGTCGCTTGTTACACCGAAACACACCCAAACTTGACTGGAGACGACGAGTTCAGATGGCCTTGGATATTGCGCGAGGCATAAATTATCTTCATCATTATAACCCGCCGATTGTCCATAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCATGAAACATATCTCACAACTAAGACAGGAAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCGTCAGATGAGAAGTCTGATGTGTACAGCTTTGGGGTGATATTATGGGAACTCGCGACTGAAAAGATTCCTTGGGATAATCTCAACCCAATGCAGGTAATTGGAGCTGTAGGGTTCATGAATCAGCGTCCAGAAATTCCAAAAGATATTGATCCAGGGTGGGCTTCTTTAATTGAGATCTGTTGGCACAGTGATCCAACTTGTCGACCAACTTTTCTGGAACTGCTTGAAAGGCTTAGAGAGTTGCAAAAAAAGTATGTCATTCAGTTCCAGGCAGCCCGGTCTGCTAGTGGCGAAAACACCCAAAGAAAGGAGTCCTAG 2220 0.4212 MMRSEEREKAVQKKIQELEEGHAYMKQEMSKLKLSDGREQQQHHHRQRSHSVSPQRSRLGSWNKGSCSFKHSSPLRKETHAHALVNFTEKHYLNILHSLGHSLHILDLNSRIIYWNRSAENLYGYAADEVLGQDGIDLLVDSRDWELACDTVNCVMKGEKWSGQFLVKNKKGEKFLAVTTNTPFYDDGSLVGIICVSSDSRPFLEMRAPFFGVKNAESDYGIRRSSSVSNKLGFDSQQPLQTALASKISNLASKMGNKVKSKIWTGENNMDRDGGNGESQHSDLGFSEHREDANSSGASTPKGDLPQSPVGVFYRVEEKFEAKTSRDSGDESEGKPVNKSLPTKPETWIQKKTSTWPWRTNDREESEARNVRAAEPWRQNDQENESVNQKIISSGLKHENQAGESNRPTNNEASLSRSSSYNVNSTSSASSCGSAGSGAVSSKVDADNDCFDYEILWEDLTIREQIGQGCCGTVYHALWYGSDVAVKVFSKQEYSDDLILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTPKLDWRRRVQMALDIARGINYLHHYNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNPMQVIGAVGFMNQRPEIPKDIDPGWASLIEICWHSDPTCRPTFLELLERLRELQKKYVIQFQAARSASGENTQRKES* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4458 739 ProSiteProfiles PAS repeat profile. 88 159 IPR000014 -
Mtr4g4458 739 Pfam PAS fold 91 197 IPR013767 GO:0006355
Mtr4g4458 739 ProSiteProfiles Protein kinase domain profile. 460 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g4458 739 Gene3D Transferase(Phosphotransferase) domain 1 539 726 - -
Mtr4g4458 739 SUPERFAMILY PYP-like sensor domain (PAS domain) 88 199 IPR035965 -
Mtr4g4458 739 PRINTS Tyrosine kinase catalytic domain signature 534 547 IPR001245 GO:0004672|GO:0006468
Mtr4g4458 739 PRINTS Tyrosine kinase catalytic domain signature 573 591 IPR001245 GO:0004672|GO:0006468
Mtr4g4458 739 PRINTS Tyrosine kinase catalytic domain signature 620 630 IPR001245 GO:0004672|GO:0006468
Mtr4g4458 739 PRINTS Tyrosine kinase catalytic domain signature 639 661 IPR001245 GO:0004672|GO:0006468
Mtr4g4458 739 PRINTS Tyrosine kinase catalytic domain signature 683 705 IPR001245 GO:0004672|GO:0006468
Mtr4g4458 739 SMART pas_2 90 157 IPR000014 -
Mtr4g4458 739 Coils Coil 1 21 - -
Mtr4g4458 739 SMART serkin_6 460 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g4458 739 MobiDBLite consensus disorder prediction 274 290 - -
Mtr4g4458 739 Gene3D Phosphorylase Kinase; domain 1 453 537 - -
Mtr4g4458 739 TIGRFAM sensory_box: PAS domain S-box protein 89 199 IPR000014 -
Mtr4g4458 739 Pfam Protein tyrosine and serine/threonine kinase 460 712 IPR001245 GO:0004672|GO:0006468
Mtr4g4458 739 MobiDBLite consensus disorder prediction 1 43 - -
Mtr4g4458 739 CDD PAS 105 199 IPR000014 -
Mtr4g4458 739 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 32 735 - -
Mtr4g4458 739 MobiDBLite consensus disorder prediction 321 421 - -
Mtr4g4458 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 579 591 IPR008271 GO:0004672|GO:0006468
Mtr4g4458 739 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 32 735 - -
Mtr4g4458 739 MobiDBLite consensus disorder prediction 380 421 - -
Mtr4g4458 739 CDD STKc_MAP3K-like 466 705 - -
Mtr4g4458 739 Gene3D PAS domain 101 202 - -
Mtr4g4458 739 MobiDBLite consensus disorder prediction 357 379 - -
Mtr4g4458 739 SUPERFAMILY Protein kinase-like (PK-like) 449 712 IPR011009 -
Mtr4g4458 739 MobiDBLite consensus disorder prediction 265 309 - -
Mtr4g4458 739 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4458 Mtr-Chr4 58563021 58569936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4458 13 738 MAP Kinase Kinase Kinase AT3G06620 56.234 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Mtr4g4458 PK_Tyr_Ser-Thr 6.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4458 - - gmx:100800867 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4458 4 58563021 58569936 Mtr4g4458 4 58563021 58569936 ECH
Mtr4g4458 4 58563021 58569936 Mtr2g1203 2 13047005 13053763 PCT