Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4437 ATGATGATGGCAAATAACTTACCGGGTCAACTTGTTGGATCAGAGATACATGGATTCCACACATTGCAAGACCTGGATGTTGCGAGCATTACGGAGGAAGCAAGAACAAGATGGCTTCGTCCCAATGAAATTCATGCCATGCTTTCTAATCACAAGTATTTTACCATCAATGTCAAGCCAATGAATTTGCCTAAAAGTGGTACTATTGTATTGTTTGACCGCAAGAAGCTTCGGAACTTTAGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGTCTAGATAACCCAAATTTTGTTCGTAGATGTTATTGGCTGCTTGACAAGAGCCTGGAACACATCGTCCTTGTTCATTATCGTGAAACACAAGAGTTTCAGGGTTCTCCCATCACTCCCGTAAATTCAAACTCTACTACTGCTTCTGACCCATCTGCACCATGGCTTTTGTCAGAAGAAATAGATTCAGGGACCAAAACTGCATATGCTGGTGAGATTAATGAAAATATAACAGTCAAAAGCCATGAACTGAGGCTTCACGAGCTTAATACACTTGAATGGGATGACCTAGTCGTAGCAAACGATCTTAACACCTCTGTTGTGCCTAATGGAGGAAAAGTTCCCTATTTTGATCAACAAAATCAAATTTTACTGAATGACAGTTTTAGCAATGTAGTCAACAATGCATCTGCAGAAATTCGTACGTTCAATAATTTAACCCAGCCAATTGCAGTGAGCAATAGTATTCCATACAATTTTTCAGAAAGTGTTACTCTTCAGACAATTAGCAATCAAGGATATCAAAATGAGCAGAGGAACCATCCTGTCTCTTCAAGTGGTGTTGATTCCTTAAACACTTTGGTCAATGACAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCAATTCATGTCTGATTCCCCTTGTTCAGTTGATGATTCTGCTCTTGGATCCTCAGTTTCATCCGTTAATGAACCGTATTCATCTCTGGTAGTGGACAATCAGCAACTTTCCCTTCCAGAACAAGTATTTAATCTTACCGATGTGTCCCCTGCGTGGGTGTCTTCCACAGAGAAATCAAAGATCCTAGTGACCGGACTCTTTCATAAAGACTATCTGCACCTCCCAAAGTCCAATCTAATATGTGTATGTGGTGATGCAAGTGTTCCTGCAGAAATTGTTCAGGATGGGGTATACCGTTGCTGGGTGCCACCGCATTCTCCAGGATTTGTGAATCTCTACTTGAGCTTTGATGGCCATAACCCTATCAGCCAAGTTGTTACTTTTGAGTATCGTACTCCTGTTTTGCATGATCCAGTAGCTTCTATGGAAGAGAAGAACAACTGGGACGAGTTTCAACTTCAAATGAGGCTTTCTTATTTGCTCTTTGCTAAACAACAGAGTCTTGATGTCATCTCTAGTAAAGTATCACTTAGTAGACTAAAGGAGGCAAGGGAATTCTCCTTAAAGACATCATTTATTTCCAATACTTGGCAATACTTAATGAAGTCAACTTTAGACAACAAAATTCCATTTTCGCAAGCTAAAGATGCTCTGTTTGGAATTGCATTGAAAAACAGATTAAAGGAATGGCTTTCAGAAAAAATTGTTTTAGGATGCAAGACTACTGAATACGATGCGCAAGGACAAAGTGTCATCCATTTGTGTGCAATTTTGGAATATACATGGGCAATTACTTTATTTTCATGGTCAGGCTTATCACTAGATTTCCGGGATAAATTCGGATGGACTGCTCTTCATTGGGCAGCATATTACGGCAGGGAGAAAATGGTTGCAACTTTGTTGTCAGCTGGGGCAAAGCCAAACTTGGTCACGGATCCAACTCACCAAAACCCTGGTGGATGTACTGCCGCTGATCTTGCTTATACGAGGGGTTATCATGGCTTAGCAGCTTATCTTTCGGAAAAGTCTCTAGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAAACTAGCACGGATGATCCAGTAAATTCCGAGAACCTTACCGAGGAGCAGCTCTATGTGAAAGATACACTGGCAGCTTACCGGACAGCTGCCGATGCAGCAGCACGCATACAAGAAGCATATAGGCAGCATTCCTTAAAGTTACAAACAGAGGCGGTTGAGTTTTCCAGCCCAGAAGCTGAAGCGCGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTCCGCAATTTTGAGACAAAGAAAGTGATGGCTGCTGCTGCTCGAATACAACATAGATTCCGTACATGGAAGATTCGTAGAGATTTTCTCAACATGCGCCGTCAAGCTATCAAGATTCAAGCTGCTTTCAGGTGCTTTCAACAACGGAAACAATATTGTAAAATCATTTGGTCAGTTGGCGTGGTTGAGAAAGCAGTGTTGCGTTGGCGTTTAAAGAGAAAGGGCTTCCGTGGGCTCCGGCTTAATACCGAGGAAGAATCGGGAGATCAGAATCAGCAAAGTGATGCAGAGGAGGAATTCTTTCGGACTGGTAGGAAACAAGCCGAAGAACGTGTCGAGAGAAGTGTAATTCGAGTGCAGGCTATGTTCCGTTCTAAGAAAGCGCAAGAAGATTACAGGAGGATGAAGTTGGCCCTTAATCAAGCAAAGCTGGAACGGGAATATGAAAAAATGCTCAGTAATGAAGTTGACATGAAAATGAAGAGGTAG 2775 0.4173 MMMANNLPGQLVGSEIHGFHTLQDLDVASITEEARTRWLRPNEIHAMLSNHKYFTINVKPMNLPKSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGLDNPNFVRRCYWLLDKSLEHIVLVHYRETQEFQGSPITPVNSNSTTASDPSAPWLLSEEIDSGTKTAYAGEINENITVKSHELRLHELNTLEWDDLVVANDLNTSVVPNGGKVPYFDQQNQILLNDSFSNVVNNASAEIRTFNNLTQPIAVSNSIPYNFSESVTLQTISNQGYQNEQRNHPVSSSGVDSLNTLVNDRLQSQDSFGMWVNQFMSDSPCSVDDSALGSSVSSVNEPYSSLVVDNQQLSLPEQVFNLTDVSPAWVSSTEKSKILVTGLFHKDYLHLPKSNLICVCGDASVPAEIVQDGVYRCWVPPHSPGFVNLYLSFDGHNPISQVVTFEYRTPVLHDPVASMEEKNNWDEFQLQMRLSYLLFAKQQSLDVISSKVSLSRLKEAREFSLKTSFISNTWQYLMKSTLDNKIPFSQAKDALFGIALKNRLKEWLSEKIVLGCKTTEYDAQGQSVIHLCAILEYTWAITLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTHQNPGGCTAADLAYTRGYHGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTDDPVNSENLTEEQLYVKDTLAAYRTAADAAARIQEAYRQHSLKLQTEAVEFSSPEAEARKIVAAMKIQHAFRNFETKKVMAAAARIQHRFRTWKIRRDFLNMRRQAIKIQAAFRCFQQRKQYCKIIWSVGVVEKAVLRWRLKRKGFRGLRLNTEEESGDQNQQSDAEEEFFRTGRKQAEERVERSVIRVQAMFRSKKAQEDYRRMKLALNQAKLEREYEKMLSNEVDMKMKR* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4437 924 ProSiteProfiles IQ motif profile. 772 800 IPR000048 GO:0005515
Mtr4g4437 924 Gene3D - 538 676 IPR036770 -
Mtr4g4437 924 Pfam IPT/TIG domain 372 457 IPR002909 -
Mtr4g4437 924 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 924 - -
Mtr4g4437 924 SMART ANK_2a 607 636 IPR002110 GO:0005515
Mtr4g4437 924 SMART ANK_2a 646 677 IPR002110 GO:0005515
Mtr4g4437 924 ProSiteProfiles CG-1 DNA-binding domain profile. 27 153 IPR005559 GO:0003677
Mtr4g4437 924 Pfam CG-1 domain 33 146 IPR005559 GO:0003677
Mtr4g4437 924 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Mtr4g4437 924 SUPERFAMILY E set domains 371 458 IPR014756 -
Mtr4g4437 924 Coils Coil 887 907 - -
Mtr4g4437 924 SUPERFAMILY Ankyrin repeat 548 669 IPR036770 -
Mtr4g4437 924 Gene3D - 768 818 - -
Mtr4g4437 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 821 IPR027417 -
Mtr4g4437 924 ProSiteProfiles IQ motif profile. 794 818 IPR000048 GO:0005515
Mtr4g4437 924 ProSiteProfiles Ankyrin repeat region circular profile. 607 635 - -
Mtr4g4437 924 ProSiteProfiles IQ motif profile. 875 903 IPR000048 GO:0005515
Mtr4g4437 924 SMART CG_1_2 30 148 IPR005559 GO:0003677
Mtr4g4437 924 Gene3D Immunoglobulins 366 461 IPR013783 -
Mtr4g4437 924 Pfam Ankyrin repeats (3 copies) 565 636 IPR002110 GO:0005515
Mtr4g4437 924 SMART iq_5 770 792 IPR000048 GO:0005515
Mtr4g4437 924 SMART iq_5 873 895 IPR000048 GO:0005515
Mtr4g4437 924 SMART iq_5 793 815 IPR000048 GO:0005515
Mtr4g4437 924 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4437 Mtr-Chr4 58388447 58396051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4437 30 907 CAMTA Transcription Factor Family AT3G16940 54.773 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Mtr4g4437 Ank_2 8.3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4437 K21596 - gmx:100793970 1509.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4437 4 58388447 58396051 Mtr4g4437 4 58388447 58396051 ECH
Mtr4g4437 4 58388447 58396051 Mtr2g1230 2 13327863 13334641 PCT