Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4430 ATGGGAAGAGCTCCTTGCTGTGAGAAGATTGGTTTGAAGAAAGGAAGATGGACTGCAGAAGAGGATAAGATCTTAACTGATTATATCCAAGAACATGGTGAAGGATCTTGGAGATCTTTGCCAAAGAATGCAGGTTTGTTGAGATGTGGAAAGAGTTGCAGACTCAGATGGATAAACTACTTAAGATCAGATGTGAAGAGAGGTAACATAACTCCTCAGGAGGAAGAAATCATTGTCAAATTGCATGCTGTTCTTGGTAACAGGTGGTCTGTAATAGCTGGACATTTACCAGGACGTACAGATAATGAGATAAAAAATTATTGGAACTCTCATTTAAGGAGAAAGATTTACTGCTTCATGAAGTCATTAAATGAGTCATTTTCACCAATTGACTTAGCTGCTGTTAACCTAGCAGCTGCTTCCAAGAGAAGAGCTGGTAGAGGAGCTGCACCAAGGCAAGATCAGAACAACAAATACAACAAAAAAGAGGTTCTTGAAGTTCAATTGCCAACACTACTACATACAAGAAAAGAAGAAGAGCTACAACAAGGTTATAATAATACTAATAATTCATCATGCCCTAATATGAACGAATTAGTTGACAATTTGGAACCATATGAATGGTTAGATGATGAAATTATAAAACTAAGTTACATGTTTGAAAGTGGAGTACTTGTTAGTCCAGATCATGAGAATAATAATAATAATAATAATAATAATAATATTAATATTAATGTAACCAATGATGATAATAATATTCTAGATTCTGATTTTGGTGTACTAGTGGGTAATAATGATGGTGGTAGTGGTGGTGTTTGGAGTTCATCAAATGGTGCTGAAAGTGGAGAGTGTAATTCTTCTGTGAATTCTGTTTATGAATATCAATGGCCTGATATGCATTTAGAAGGTAGTTGTGTTCAATCCTACAATCAACAATGGGACCTTTGTGATCAACAAGGCCAAGATGTTAATTGCTTCTGGGATGCTTCAAATTACCAAGAAAATGGATTTTATCATTGA 1020 0.352 MGRAPCCEKIGLKKGRWTAEEDKILTDYIQEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESFSPIDLAAVNLAAASKRRAGRGAAPRQDQNNKYNKKEVLEVQLPTLLHTRKEEELQQGYNNTNNSSCPNMNELVDNLEPYEWLDDEIIKLSYMFESGVLVSPDHENNNNNNNNNNININVTNDDNNILDSDFGVLVGNNDGGSGGVWSSSNGAESGECNSSVNSVYEYQWPDMHLEGSCVQSYNQQWDLCDQQGQDVNCFWDASNYQENGFYH* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4430 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr4g4430 339 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mtr4g4430 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr4g4430 339 CDD SANT 16 61 IPR001005 -
Mtr4g4430 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr4g4430 339 PANTHER MYB TRANSCRIPTION FACTOR 2 287 - -
Mtr4g4430 339 SMART sant 66 114 IPR001005 -
Mtr4g4430 339 SMART sant 13 63 IPR001005 -
Mtr4g4430 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr4g4430 339 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 287 - -
Mtr4g4430 339 Gene3D - 71 116 - -
Mtr4g4430 339 Gene3D - 13 66 - -
Mtr4g4430 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr4g4430 339 CDD SANT 71 112 IPR001005 -
Mtr4g4430 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4430 Mtr-Chr4 58322387 58324778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4430 1 147 MYB Transcription Factor Family AT2G47460 70.395 5.65e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g4430 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4430 K09422 - gmx:100805532 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4430 4 58322387 58324778 Mtr4g4430 4 58322387 58324778 ECH