Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4429 ATGCCGCTTCGACCTAATTCCAAGAACGATTCTAAGCCCGATTCCAAGGCCGATGCTCGCCGTAATCGCTACAAGGTCGCCGTCGACGCTGAAGATGGTCGCCGGAGACGTGAGGACAATATGGTTGAGATTCGCAAGAACAAGCGTGAAGAGAGTTTGCAGAAGAAGCGTCGTGAAGGCCTTCAAAATCAACAACAGTTACCCGTTACCTTCGATTCAAAGTTCGAGAGTCTTCCTGCACTGGTTGCTGGTGTCTTGTCCAACTATGGTAGTGCGCAACTAGAAGCCACCACACTGTTTCGTAAACTGCTTTCAGTTGATCGGACCCCTCCGATTGAGGAGGTTATTCAATCTGGTGTTGTGCCACGTTTTGTTGAGTTTCTTGCTAGGGAAGACTCCCCTCTACTTCAGTTTGAGGCTGCATGGACGCTGACAAACATAGCATCTGGAACTTCTGAGAACACTAAGGTGGTGATTGATCACGGAGCAGTTCCTCTATTTGTCACGTTGCTTAGGTCACCTAGTGAGGATGTTAGAGAGCAGGCTGTGTGGGCTTTGGGAAATGTCGCTGGTGACTCCCCTAAGTGTCGTGATCTAGTGCTCAACCATGGTGCCCTTGTCTCACTGTTGGCCCAGTTCAATGAGCACACCAGAATTTCAATGCTGAGAAATGCCACATGGACTTTATCAAACTTCTGTAGGGGAAAGCCACCACCTGCATTTGAGCTGGTGAAACCTGCGCTTCCGGCTCTTGAGCGTTTGATTTTGTCGGAGGATGAAGAAGTTCTGACAGATGCCTGCTGGGCTTTATCATACCTATCTGATGGCACAAATGACAAAATCCAAGAAATTATTGACGCAGGTGTATGTGGCCGATTGGTGCAGCTCCTTAAGCACCAATCTGCTTCAGTGTTGATCCCTGTTGTTCGTGCAGTGGGAAATATTGTGACGGGAGATGATGATATGCAGACTCAGTTGATGATCAATCATGGTGTACTCCCTTACCTTTTAAGCCTTTTGACACAAAATCATAAGAAATCCATCAAGAAAGAATCTTGTTGGACTATATCAAACATAACAGCTGGAAGTAAAGAGCAAATACAGGCTGTTATTGATGCCGGTCTTATTGCTCCACTTGTCAGACTTCTTCAAAATGCAGAGTTTGACATTAAAAAAGAAGCTGCATGGGCAATAACAAATGCTACAGCTGGTGGAGATCATGAGCAAGTCAAGTACTTGGCGGATCAGGGTTGCATAAAACCACTGTGTGATCTGCTTAATTGCTCCGATGCAAGAATCATCATGGTCTGTTTAGAGGGTCTAGAGAATATTCTGACTGTTGGAGAAGAAGAGAAGAGGCGAGGTAACACTGAAGATGACAACTTGTATTTTCAGATGATAGATGTTTCTGAGGGATTTGACAAGATAGAAAACCTGCAAAGTCATGATAACCAAGAAATATATGAGAAGGCTGTTAAAATTCTTGAAACATATTGGTCGAACGATGAAGATGAGATGCTACCTTCAGATCAATCTGGTTTCAACTTTGGAAGCCAAAATCTTCCATCTGGTGGATTCAATTTTAGATGA 1590 0.4465 MPLRPNSKNDSKPDSKADARRNRYKVAVDAEDGRRRREDNMVEIRKNKREESLQKKRREGLQNQQQLPVTFDSKFESLPALVAGVLSNYGSAQLEATTLFRKLLSVDRTPPIEEVIQSGVVPRFVEFLAREDSPLLQFEAAWTLTNIASGTSENTKVVIDHGAVPLFVTLLRSPSEDVREQAVWALGNVAGDSPKCRDLVLNHGALVSLLAQFNEHTRISMLRNATWTLSNFCRGKPPPAFELVKPALPALERLILSEDEEVLTDACWALSYLSDGTNDKIQEIIDAGVCGRLVQLLKHQSASVLIPVVRAVGNIVTGDDDMQTQLMINHGVLPYLLSLLTQNHKKSIKKESCWTISNITAGSKEQIQAVIDAGLIAPLVRLLQNAEFDIKKEAAWAITNATAGGDHEQVKYLADQGCIKPLCDLLNCSDARIIMVCLEGLENILTVGEEEKRRGNTEDDNLYFQMIDVSEGFDKIENLQSHDNQEIYEKAVKILETYWSNDEDEMLPSDQSGFNFGSQNLPSGGFNFR* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4429 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 204 IPR000225 GO:0005515
Mtr4g4429 529 PANTHER IMPORTIN ALPHA 12 519 - -
Mtr4g4429 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 331 374 IPR000225 GO:0005515
Mtr4g4429 529 ProSiteProfiles IBB domain profile. 4 66 IPR002652 GO:0006606|GO:0061608
Mtr4g4429 529 SMART arm_5 277 317 IPR000225 GO:0005515
Mtr4g4429 529 SMART arm_5 193 234 IPR000225 GO:0005515
Mtr4g4429 529 SMART arm_5 151 191 IPR000225 GO:0005515
Mtr4g4429 529 SMART arm_5 108 149 IPR000225 GO:0005515
Mtr4g4429 529 SMART arm_5 406 446 IPR000225 GO:0005515
Mtr4g4429 529 SMART arm_5 363 403 IPR000225 GO:0005515
Mtr4g4429 529 SMART arm_5 320 361 IPR000225 GO:0005515
Mtr4g4429 529 SMART arm_5 236 275 IPR000225 GO:0005515
Mtr4g4429 529 Pfam Armadillo/beta-catenin-like repeat 363 402 IPR000225 GO:0005515
Mtr4g4429 529 Pfam Armadillo/beta-catenin-like repeat 278 316 IPR000225 GO:0005515
Mtr4g4429 529 Pfam Armadillo/beta-catenin-like repeat 110 149 IPR000225 GO:0005515
Mtr4g4429 529 Pfam Armadillo/beta-catenin-like repeat 407 445 IPR000225 GO:0005515
Mtr4g4429 529 Pfam Armadillo/beta-catenin-like repeat 321 361 IPR000225 GO:0005515
Mtr4g4429 529 Pfam Armadillo/beta-catenin-like repeat 193 234 IPR000225 GO:0005515
Mtr4g4429 529 Pfam Armadillo/beta-catenin-like repeat 151 190 IPR000225 GO:0005515
Mtr4g4429 529 Pfam Armadillo/beta-catenin-like repeat 242 274 IPR000225 GO:0005515
Mtr4g4429 529 Pfam Importin beta binding domain 20 98 IPR002652 GO:0006606|GO:0061608
Mtr4g4429 529 MobiDBLite consensus disorder prediction 9 58 - -
Mtr4g4429 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 374 402 IPR000225 GO:0005515
Mtr4g4429 529 PIRSF Importin_alpha 10 528 IPR024931 GO:0005737|GO:0006606|GO:0061608
Mtr4g4429 529 Gene3D - 76 500 IPR011989 -
Mtr4g4429 529 MobiDBLite consensus disorder prediction 1 63 - -
Mtr4g4429 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 119 162 IPR000225 GO:0005515
Mtr4g4429 529 SUPERFAMILY ARM repeat 21 503 IPR016024 -
Mtr4g4429 529 Pfam Atypical Arm repeat 461 505 IPR032413 -
Mtr4g4429 529 Gene3D - 18 58 IPR036975 GO:0006606
Mtr4g4429 529 PANTHER IMPORTIN SUBUNIT ALPHA 12 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4429 Mtr-Chr4 58312412 58316540 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4429 K15042 - gmx:100808498 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4429 4 58312412 58316540 Mtr4g4429 4 58312412 58316540 ECH
Mtr4g4429 4 58312412 58316540 Mtr1g3000 1 41164358 41169627 ECH
Mtr4g4429 4 58312412 58316540 Mtr7g3615 7 53154077 53158582 ECH
Mtr4g4429 4 58312412 58316540 Mtr2g1243 2 13472371 13476567 PCT