Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4427 ATGGTGGTTGATCACAGTGATAAGGTATCAGAAGGTGAAGATTCAAACCCTAACGCCGCCGTTTCATCAGATAACAGCAATCCAAAGAAAACATGTGCTGATTGCGGTACTTCCAAAACTCCTCTATGGCGTGGTGGTCCTGCTGGTCCAAAGTCACTGTGCAATGCTTGCGGGATCAGGAGCAGGAAGAAAAAGAGAGCAATATTAGGGATAAGCAAAGGAAACAACGAAGAAGGAACAAGAAAGGGGAAAAAGAGTAACAGTGGCGGCGGCGGCGGCGGAAGCAAAGTTGGTGATAATTTGAACATGAAGCAGAGATTATTGAATTTAGGGAAAGAAGTGTTTATGAATCGATCGCATTGGAAGAAATTGGGAGAAGATGAACAAGCTGCTGTGTTGTTGATGTCTCTTTCTTATGGATCTGTTTATGCCTAA 435 0.4368 MVVDHSDKVSEGEDSNPNAAVSSDNSNPKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEEGTRKGKKSNSGGGGGGSKVGDNLNMKQRLLNLGKEVFMNRSHWKKLGEDEQAAVLLMSLSYGSVYA* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4427 144 Gene3D - 27 89 IPR013088 GO:0006355|GO:0008270
Mtr4g4427 144 ProSitePatterns GATA-type zinc finger domain. 32 57 IPR000679 GO:0006355|GO:0043565
Mtr4g4427 144 ProSiteProfiles GATA-type zinc finger domain profile. 26 62 IPR000679 GO:0006355|GO:0043565
Mtr4g4427 144 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 27 66 - -
Mtr4g4427 144 MobiDBLite consensus disorder prediction 13 34 - -
Mtr4g4427 144 CDD ZnF_GATA 31 81 IPR000679 GO:0006355|GO:0043565
Mtr4g4427 144 SMART GATA_3 26 85 IPR000679 GO:0006355|GO:0043565
Mtr4g4427 144 MobiDBLite consensus disorder prediction 67 100 - -
Mtr4g4427 144 Pfam GATA zinc finger 32 66 IPR000679 GO:0006355|GO:0043565
Mtr4g4427 144 MobiDBLite consensus disorder prediction 1 50 - -
Mtr4g4427 144 PANTHER OS01G0976800 PROTEIN 3 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4427 Mtr-Chr4 58272133 58273196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4427 2 144 C2C2-Gata Transcription Factor Family AT5G49300 52.980 4.31e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr4g4427 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4427 - - aprc:113847917 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4427 4 58272133 58273196 Mtr4g4427 4 58272133 58273196 ECH
Mtr4g4427 4 58272133 58273196 Mtr7g3618 7 53175844 53177223 ECH