Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4423 ATGATGAATCTAAGCAACAACGGAAAAGGATCAATTTCTACTGTTACTTCAACTGCTACTACTATGAAATCCGGTGAAGGTTCCGATCAGTTTCCGGCGGGTTTACGAGTTCTTGTTGTGGATGATGATCCTACGTGTCTTATGATTCTTGAGAAGATGTTGCGCACATGTCTTTATGAAGTAACGAAATGCAATCGAGCTGAGACGGCACTTTCACTACTCAGAGAGAACAAGAATGGATTTGATATTGTTATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAACTCTTAGAACATATTGGATTGGAAATGGACCTTCCAGTTATTATGATGTCTGCCGATGATGGTAAAAGTGTTGTTATGAAGGGTGTAACACACGGTGCTTGTGATTACTTGATTAAACCTGTTCGTATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAGAAAAAGAACGAGTGGAAAGATACAGAGCAATCAGGTAGTGCTGATGAGGGAGATCGACATCCGAAGGCATCTGATGATGCTGATTATTCGTCTTCTGCTAATGAAGGAAATTGGAGAAACTCGAGAAAGAGAAGGGATGATGAAGAGGAAGGTGACGATAGAGATGACTCGTCAACACTAAAGAAGCCTCGGGTTGTTTGGTCTGTCGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATCAACTAGGAATTGACAAGGCTGTTCCCAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACTTGCAGAAATATCGATTGTATCTTCGAAGGCTGAGTGGAGTTTCTCAGCACCAGAATAATTCATTTCTCAGCCCACAAGAGGCATCATTTGGCACGATTTCGTCAATGAACGGACTTGACCTTCAAACTCTTGCAGCAGCTGGCCAGCTCCCAGCGCAAAGTCTAGCCACTCTTCAGGCAGCAGGACTTGGTAGGTCAACTGTGAAATCAGGCTTACCAATGCCTCTCATGGATCAAAGGAACCTTTTCAGTTTTGAAAACCCAAGGTTGAGATTTGGAGAAGGGCAACAACAACTTTTGAATGGTAGTAATAATAAACCAACAAATCTTCTTCACGGAGTTCCTACTAACATGGAGCCAAAGCAACTCGCCAATTTGCACCAGTCTGCAGCACAGTCCCTCGGCAACATGAATATGCGAGTCCCCGCTTCTGCTACACAGGGAAATCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGACCAATGCTAAGTGAAAATACTGGTTCTCATGTTCCAAGATTACCGAACCTCTTGGGGCAGTCTACTGTGTCAAATGGAATTTCTGACGGTCTTATGGGGAGAAACAACATGGCTAGTAGCAGTAGAGCGCCTTCGTTTAATCCTGTTCCACAGAGCTCTTCGTTTTTGAATTTTCCCATGAATCAAAGCACTGAAATGTCTGTTAGTAATTTCCCTCTTGGAAGCACTCCAGGTATATCTAGTATCACAACCAAAGGCTCATTTCAAGCCGAAGTTAATTCGGGAATTAAAGGATCAGCTGGATTTCCAAGTTATGATATTTTTAACGAACTGAACCATCAGAAATCCCGGGATTGGGGGATGACAAACCAAGGTCTAATGTATGATTCCTCATCGCATGCAAATCCTTTACATGGCAACATCGATGTCTCTCCGTCGGTTTTAGTCCATCAGGGCTTTTCTTCTGCTCAACAAACCGGACATAGCAGAGATGCTTCTTTGCTTGGAAAATCTCCTTTCTCTCTTGGAGAAGGCTTGGAACAAGGTAATCTCCAAAATGGTGGCGGTCAACATTTCAATCCTCTTTATGTTGAAAATTTAACAAGGGTTAAGGCTGAAAGAGTTCCTGACGCGAGCTCCCATACTGACCTCTTCCCTGATCATTTCGGGCAGGATGATCTCATGAGTGCACTTCTGAAACAGCAGGAAGGCATTGGACAAGGCGAGAATGAGTTTGACTTTGACGGGTATTCTCTGGACAACATTCCTGTCTAG 2046 0.436 MMNLSNNGKGSISTVTSTATTMKSGEGSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDTEQSGSADEGDRHPKASDDADYSSSANEGNWRNSRKRRDDEEEGDDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNSFLSPQEASFGTISSMNGLDLQTLAAAGQLPAQSLATLQAAGLGRSTVKSGLPMPLMDQRNLFSFENPRLRFGEGQQQLLNGSNNKPTNLLHGVPTNMEPKQLANLHQSAAQSLGNMNMRVPASATQGNPLLMQMAQSQPRGPMLSENTGSHVPRLPNLLGQSTVSNGISDGLMGRNNMASSSRAPSFNPVPQSSSFLNFPMNQSTEMSVSNFPLGSTPGISSITTKGSFQAEVNSGIKGSAGFPSYDIFNELNHQKSRDWGMTNQGLMYDSSSHANPLHGNIDVSPSVLVHQGFSSAQQTGHSRDASLLGKSPFSLGEGLEQGNLQNGGGQHFNPLYVENLTRVKAERVPDASSHTDLFPDHFGQDDLMSALLKQQEGIGQGENEFDFDGYSLDNIPV* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4423 681 MobiDBLite consensus disorder prediction 155 212 - -
Mtr4g4423 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 652 - -
Mtr4g4423 681 Pfam Response regulator receiver domain 37 145 IPR001789 GO:0000160
Mtr4g4423 681 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 215 268 IPR006447 GO:0003677
Mtr4g4423 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 271 IPR017930 -
Mtr4g4423 681 SUPERFAMILY CheY-like 34 156 IPR011006 -
Mtr4g4423 681 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Mtr4g4423 681 PIRSF RR_ARR_type-B 15 673 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mtr4g4423 681 Gene3D - 212 274 - -
Mtr4g4423 681 CDD REC_typeB_ARR-like 37 151 - -
Mtr4g4423 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 652 IPR045279 GO:0009736
Mtr4g4423 681 MobiDBLite consensus disorder prediction 191 212 - -
Mtr4g4423 681 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160
Mtr4g4423 681 Gene3D - 35 206 - -
Mtr4g4423 681 MobiDBLite consensus disorder prediction 155 179 - -
Mtr4g4423 681 Pfam Myb-like DNA-binding domain 217 267 IPR001005 -
Mtr4g4423 681 SMART REC_2 35 147 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4423 Mtr-Chr4 58228643 58232967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4423 70 681 Response Regulator Gene Family AT3G16857 51.446 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr4g4423 Response_reg 6.1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4423 - K14491 gmx:100781102 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4423 4 58228643 58232967 Mtr4g4423 4 58228643 58232967 ECH
Mtr4g4423 4 58228643 58232967 Mtr2g1248 2 13500134 13503551 PCT