Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4413 ATGGCGGCTTCAGCAGACATCAGAGGCATTTTAACCGCATTCAATCCTTCTCTTGACTTCTTCGCTATTTCCACCGGTGACGGTCGTATTAAGATATGGGATGCTCTCAAGGGTCAAGTTCAGACCGAGTTTGCAGACATTACTTCAACTCATGAAACCAATATATTTGATCAAAAAGGACATCTTTCTGTTGATTATACTTGTATCAAGTGGTTGTCTTTTCAATCAAAGAGGAAAAGAAAACATTCATCATCCTCATTGTTGCTGCTTGGAACTGGTAGTGGTGATGTTTTAGCACTTGATGTTTCTGCTGGTCAATTGTCTTGGAAAATCAATGATTGTCATCCTGGAGGTGTCAGAGCCATTTCGTCTTTGGCAAATGGATCAACCTTTTATACTGCTGGTGCAGATGGAATGATATGCGCAACAGATTTCTCGACAGGAAAACTGCTGGAGAAATTTAAAGCCTCATCAAAGGCAGTATCTTGTATATCAGTTTCTCCAGATGGGAAGAAGTTAGCTACTGCCGCAGCACAATTGAAGATTTTCAATTGTTCTAATAAAAAGAAGATTCAAAAATGCTCTGGTCATCCTGGATCTGTCCGGTGTATGGTCTTCACTGAAGATAGCAAGTATATCCTCTCATCTGCTGTTGGTGAAAGATATGTTGCTGTTTGGAGTATAGATGGCTCTAAAAAGCAGTCAGCTAGCTGTGTTCTTGCAATGGAGCACCCTGCTGTCTTTCTTGATAGTAGGTGTATTGATAAAGGGGAACATGATGAGGCTGGCATATGTGTTTTGGCCATATCAGAAGCTGGTCTTTGTTATTTATGGTTTGGAAATAGTATTGAAGAACTACGAAATGCAAAACCCACGAAAATCTCATTATCTTCGGAAGACATGTCCACAAAAAATTACAAGGGTGCACTCCCCGCAATATATGCTGCAAACTTACAAAGCACCCAGAAGCCGGCTTCTGGGCAGGTTTTTCTTGTTTACGGGATGCTTGTAAAACCATCATTTCAAAATATTCCAGTGCATTCCGGTGCAGATGTAAAGTTGAGTGTCTCCCGTGATGGTGTTCTTCTTCCAAAGAGCCAATCTCGTCTAAAATCTAAAAACAGGACAGATGTCCAAAGAGTAACTGCCCTAGACCGTGCTAATGCCGAGGATGCCTTGCTTCCAATTCCTAAAGTTTTTGATTCCCGTGAGAAAGAGGAATCATTTCAAGACTCTTTGGACAAGGATGTGATGGATGATTTGTTTACAAGTGGTATAGCCGATTCTATGGAGATAGATGATGGTATTGTGCAAAGTGAGACTAATATAATTAGCATGGAGGACCGGATGAGATCACTAGGATTGCTTTACAATGAGAGTGATTGTGCATCAAACTTTGAACTCTGTTCTAAATTGTTAAAGGGTATTGATCTAGAATCTATTCTTCCAAAGAAGAAGGTAAGAGCAGCTGTTTTGTCTATAGAACCAAGCGAAGCATTCAAGCTACTGGAAGTGTTGCTAGCTATATGGCAATCAAGGTCGTCTAGAAGAGAGTATGTGCTTCCATGGATGTATAGCATTTTAGTTACCCATGGTCATAATGCTGCTGAAGAATCTGTAACACATATGCTTGATTCAGTGTACAAGATTACAAATTCCAGAGGGGCAACTCTTCAGTCTTTGTTGCAATTATCAGGTCGGCTACAACTGGTGACATCACAGATTGATAAGGCTTCTCAGAGAATAAGCCATTCGGTGCATGATATCCAAACAGAAGAAAGTGAAGACGAGGCTGAATTTTATCAAGAGGATGAAGATGGTGAAAAGGACGGTGAAGAAGATGATGCATCTGAAATAAGTTCTGACAATGAAAACTAG 1878 0.4047 MAASADIRGILTAFNPSLDFFAISTGDGRIKIWDALKGQVQTEFADITSTHETNIFDQKGHLSVDYTCIKWLSFQSKRKRKHSSSSLLLLGTGSGDVLALDVSAGQLSWKINDCHPGGVRAISSLANGSTFYTAGADGMICATDFSTGKLLEKFKASSKAVSCISVSPDGKKLATAAAQLKIFNCSNKKKIQKCSGHPGSVRCMVFTEDSKYILSSAVGERYVAVWSIDGSKKQSASCVLAMEHPAVFLDSRCIDKGEHDEAGICVLAISEAGLCYLWFGNSIEELRNAKPTKISLSSEDMSTKNYKGALPAIYAANLQSTQKPASGQVFLVYGMLVKPSFQNIPVHSGADVKLSVSRDGVLLPKSQSRLKSKNRTDVQRVTALDRANAEDALLPIPKVFDSREKEESFQDSLDKDVMDDLFTSGIADSMEIDDGIVQSETNIISMEDRMRSLGLLYNESDCASNFELCSKLLKGIDLESILPKKKVRAAVLSIEPSEAFKLLEVLLAIWQSRSSRREYVLPWMYSILVTHGHNAAEESVTHMLDSVYKITNSRGATLQSLLQLSGRLQLVTSQIDKASQRISHSVHDIQTEESEDEAEFYQEDEDGEKDGEEDDASEISSDNEN* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4413 625 SMART WD40_4 187 227 IPR001680 GO:0005515
Mtr4g4413 625 SMART WD40_4 4 34 IPR001680 GO:0005515
Mtr4g4413 625 SMART WD40_4 104 144 IPR001680 GO:0005515
Mtr4g4413 625 SMART WD40_4 147 184 IPR001680 GO:0005515
Mtr4g4413 625 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 43 IPR001680 GO:0005515
Mtr4g4413 625 Pfam Dip2/Utp12 Family 483 572 IPR007148 -
Mtr4g4413 625 Gene3D - 142 280 IPR015943 GO:0005515
Mtr4g4413 625 Gene3D - 6 141 IPR015943 GO:0005515
Mtr4g4413 625 SUPERFAMILY WD40 repeat-like 13 234 IPR036322 GO:0005515
Mtr4g4413 625 MobiDBLite consensus disorder prediction 582 625 - -
Mtr4g4413 625 PANTHER OS03G0300300 PROTEIN 3 625 - -
Mtr4g4413 625 PANTHER OS03G0300300 PROTEIN 3 625 - -
Mtr4g4413 625 Pfam WD domain, G-beta repeat 189 226 IPR001680 GO:0005515
Mtr4g4413 625 Pfam WD domain, G-beta repeat 11 34 IPR001680 GO:0005515
Mtr4g4413 625 MobiDBLite consensus disorder prediction 592 625 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4413 109 228 U-box Gene Family AT2G33340 29.839 8.94e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4413 K14546 - gmx:100815458 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4413 4 58123833 58133636 Mtr4g4413 4 58123833 58133636 ECH