Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4409 ATGGGACAAGAATCAGATTCCAAAGCCAAGTTGGTGTTAGAAATTTGCTCCATTTCTACACGTTCTGCATCTTGTGTTCATAGGATTCCAACCAAGACAATTTTCATTGACTGGTATTGCATTCTTGGAGTAGAAGAAAATGCAGGAGTAAATACCATACGCAAAAGATACCATAAACTTGCCTTACAACTTCATCCAGATAAGAACAAACATCCAAAAGCTGAAATTGCCTTCAAACTTGTTTCTGAGGCAAATGCATGTCTAACAAATGCAGCAAAGAGAGAAGCTTTCGACTTCGAGAGGTACAAGAATTTCTGCATTGAGTGCAAAAGAATTCCATATACATCATCAGGCAATGTTTCTGTCAATTCAAGTGGTTCAGGTTTCAAGGCATGGAATATTATCACAAAATCAAGATCTTTTAAGTTTTGGAGAAATATTAAGGATATTAGAGAGAGATTTAATGAGGAGGCTAAGGTGGTTGAGAATTGTATGAGAGTAAATTCAATGTCAAGGAATGAATCTCCACTCTACAATCCAGATAGTTATCTACATAGAAGCAAGTCACATAGATTTGAGAAAGAAACGCCTGTTTTCAATCCATCTGACTACTTGTACCAAGGCTATCCTCATATGAGAGGTCTTATTAACAAGAATCCTTCCGCATTTTGGTATTTGCAGACATCTAGTATGCTGCACAATGAGAAGAGAGGAGCGCAGCATAGCTCGCCTGTGTTTGAGGTCAAATCAAGGAGTATGTTTACAAACCAATTTGCTTTTGTACCATCAAGATATTAG 798 0.3734 MGQESDSKAKLVLEICSISTRSASCVHRIPTKTIFIDWYCILGVEENAGVNTIRKRYHKLALQLHPDKNKHPKAEIAFKLVSEANACLTNAAKREAFDFERYKNFCIECKRIPYTSSGNVSVNSSGSGFKAWNIITKSRSFKFWRNIKDIRERFNEEAKVVENCMRVNSMSRNESPLYNPDSYLHRSKSHRFEKETPVFNPSDYLYQGYPHMRGLINKNPSAFWYLQTSSMLHNEKRGAQHSSPVFEVKSRSMFTNQFAFVPSRY* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4409 265 PANTHER BNAC03G44070D PROTEIN 4 252 - -
Mtr4g4409 265 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 252 - -
Mtr4g4409 265 ProSiteProfiles dnaJ domain profile. 37 101 IPR001623 -
Mtr4g4409 265 CDD DnaJ 37 84 IPR001623 -
Mtr4g4409 265 Gene3D DnaJ domain 36 163 IPR036869 -
Mtr4g4409 265 SMART dnaj_3 36 93 IPR001623 -
Mtr4g4409 265 ProSitePatterns Nt-dnaJ domain signature. 78 97 IPR018253 -
Mtr4g4409 265 Pfam DnaJ domain 37 98 IPR001623 -
Mtr4g4409 265 PRINTS DnaJ domain signature 39 57 IPR001623 -
Mtr4g4409 265 PRINTS DnaJ domain signature 57 72 IPR001623 -
Mtr4g4409 265 PRINTS DnaJ domain signature 73 93 IPR001623 -
Mtr4g4409 265 PRINTS DnaJ domain signature 110 129 IPR001623 -
Mtr4g4409 265 SUPERFAMILY Chaperone J-domain 28 102 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4409 Mtr-Chr4 58065694 58067150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4409 37 98 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.424 7.00e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4409 - - gmx:100801809 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4409 4 58065694 58067150 Mtr4g4409 4 58065694 58067150 ECH
Mtr4g4409 4 58065694 58067150 Mtr2g1272 2 13793992 13795918 PCT