Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4405 ATGTTTCACTATCATTGTTGTCTGAGAACTCTTCTCTACCTCAACAATCTTTCCAAAACCCCAAAATGTTGTTACCTTCTTCTTCTCCAACCCCACCACTCTCTCAACACCACTTCTGATTCAGATCAACACTCTTTCCCAGTTTCCTACCTCACCAACAATTGCGCTTTATCTCCACAAGATGCTCTCAAAGCATCCAAACGACTTCGTTTCAACACTCCCGACAAACCCGATTCCGTTATCGCCTTTTTCAAAACCCACGGTTTCTCCGATCACCAGATACAAACCATCATTCGCAAGATTCCATTGCTCATCGTTTACAACCCCATTAAAACCATTTTGCCAAAGTTTCAATTTTTAGCCTCCAAAGGTGCTTCTCCCAAAGACATTGTTGCCACCGTTACCAGAAGCCCCAATTTCCTTTGTTCAAGCCTTGACAAGAACATAATCCCTTCTTTTGAATTGGTAAGAAGTTTCTGTCCTTCTGATCATAAAGCTATTACTTCAGTAATCATTTGCCCCTCTTCAATTTGTGATTCTCGCTTTAAACCAAATCTTCAATTTTTGCTTGATTTTGGTGTCACTCGTTCAAGTATTTACCGTTTGCTTACTAGCAGACCTTCCACAATATGTTGTACTGATTTGAAAAAGGCTTTGGAGGAGATTAAGGAATTAGGGTTTCAACCTTCCAAATACAATTTTTGTGTAGCATTATTGGCCAAAAGGGCTGTCACCAAATCCCAATGGGATGCCAAAGTTGATGTCTTGAAGAGTTGGGGTTGTTCTGAAGATGCAGTTTTTAATGCATTTAGGAAGCAACCCAACTTTATGCTAAGGTCTCCAGATAAACTCAATGCAGTGATGAGTTTTTGGGTCGAGGAGCTTGGTTGGGATCCTTCGCTGCTCTTAGCTGAGCCGACGCTTTTTGGATACAGTATACAGAAAAGGCTTAGTCCAAGGGCATCAATTGTCAAGTATCTTCTATCCAAAGGTTTGATGAAAGAGGGTGCTAGCTTATGTACACCATTTTATCTGACTGATGAGAATTTTCAGCGAAGGTATGTGAATTATTCTGAGGAAGAAGCATCTACGCTATTAAGGCTATATCATGGAGGATGCTAG 1122 0.4073 MFHYHCCLRTLLYLNNLSKTPKCCYLLLLQPHHSLNTTSDSDQHSFPVSYLTNNCALSPQDALKASKRLRFNTPDKPDSVIAFFKTHGFSDHQIQTIIRKIPLLIVYNPIKTILPKFQFLASKGASPKDIVATVTRSPNFLCSSLDKNIIPSFELVRSFCPSDHKAITSVIICPSSICDSRFKPNLQFLLDFGVTRSSIYRLLTSRPSTICCTDLKKALEEIKELGFQPSKYNFCVALLAKRAVTKSQWDAKVDVLKSWGCSEDAVFNAFRKQPNFMLRSPDKLNAVMSFWVEELGWDPSLLLAEPTLFGYSIQKRLSPRASIVKYLLSKGLMKEGASLCTPFYLTDENFQRRYVNYSEEEASTLLRLYHGGC* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4405 373 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Mtr4g4405 373 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Mtr4g4405 373 SMART mt_12 167 195 IPR003690 GO:0003690|GO:0006355
Mtr4g4405 373 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Mtr4g4405 373 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Mtr4g4405 373 Pfam mTERF 248 351 IPR003690 GO:0003690|GO:0006355
Mtr4g4405 373 Pfam mTERF 82 283 IPR003690 GO:0003690|GO:0006355
Mtr4g4405 373 PANTHER CGI-12 PROTEIN-RELATED 6 371 IPR003690 GO:0003690|GO:0006355
Mtr4g4405 373 Gene3D Transcription termination factor 3, mitochondrial 170 368 IPR038538 -
Mtr4g4405 373 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 6 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4405 Mtr-Chr4 58041745 58043681 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Mtr4g4405 mTERF 5.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4405 K15032 - gmx:102666739 334.724