Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4401 ATGGCAGGAGGAGCCATTGAAACCCAAAGCCATGCTAGCAAGAAGAAGTTCGCCATTCTTGGTGTATCTTCAATCTTACTTATTGCCATGGTAGCTGCAGTGGCTGTTGGTGTAAATGACGCCGGCCAAGTTGAATCGGAAGGTGATAACCAAATTACAAAATCACAAAAAAACGTTAAAGTGCTTTGTGGAACAACAGAGTACAAACAAACATGTGAAAAGAGTCTTGCAAAAACAGGAAACAAAGACATGAAGGAATTGATCAAACAAGCATTCAATGCAACAGCTGAAGAACTCGTGAAACAAATACACAACTCAACACTCTACAAGGAATTGGCTACCAATGACATGACAAAGCAAGCTATGGATATTTGCAAAGAAGTCCTTGGTTATGCAGTTGATGATGTTCATCAATCTATTCACTCATTGGATAAATTTGATCTTAACAAAATTGATGAGATTGCTTATGATCTTAAAGTTTGGCTCTCAGGTACACTTGCCAATCAACAAACATGTTTAGATGGATTTGAGAACACAACTACCCATGCAGGACAAACCATGGCTAAGGTTCTTAACGCTTCTTTGGAGCTAAGTAACAATGCTTTGGATATAATCAATGGTCTTTCAGGATTTGTGAAAGATCTTAACTTGAGCTCTTTTGCAAGTGCTTTGAATAATAATAGGAAGCTTTTGTCTGAAGATGGTTTACCATCATGGGTTTCTCAAAGTCAAAGGAAACTTCTTGCGGCTCCTCAGAACGTTAAGCCTAACGTTGTTGTTGCACAAGATGGTAGTGGTCAATTTAAGACTTTGACTGAGGCACTTGCAACTGTTCCCAAGAAGAACAAAGTTCCTTTTGTTATTCATGTTAAGGCTGGTATCTATAAGGAGTATGTTGCTCTGGATAACCATAGGGACCATGTTACTATTATTGGTGATGGTCCCAAAAAGACCATATTTACTGGTAGCAAAAGCTATGGTGATGGTGTGCAGACTTACAATACCGCAACATTCAGTGTGAACTCTGCCCATTTCACGGCCTTTAACGTCGGATTCGAGAACTCAGCCGGTGCCGCAAAGCATCAAGCAGTGGCCCTCCGTGTAACAGCAGACAAAGCATTGTTCTACAACTGTGAAATGAACGGTTACCAAGATACACTCTACACACAATCCAAAAGACAATTCTACCGCGACTGCACCATTACCGGAACAATCGACTTTGTCTTTGGTGATGCAGTTGGAGTTTTCCAAAACTGCAAACTCATCGTTAGAAAACCAATGGCAACTCAACAATGCATGGTGACAGCAGGAGGAAGAACCAAAGTTGACAGTGTATCCGCCCTTGTTTTCCAAAACTGCCATTTCACCGGGGAACCCGAAGTTCTTACCATGCAACCCAAGATAGCTTATTTGGGAAGACCATGGAGAAACTTCTCCAAGGTTGTTATCGTGGATTCTCTCATTGATGGTCTCTTTGTACCAGAGGGTTACATGCCATGGATGGGAAATCTTTTCAAGGAGACATGCACTTATTTGGAATACAACAACAAGGGTGCTGGTGCTGCCACTAATCTTAGAGTGAAATGGCCAGGTGTTAAAACCATCTCTGCCGGTGAAGCTGCTAAATACTATCCAGGAAAGTTTTACGAAATTGCTAACGCAACTGCTCGTGATGATTGGATTACTGAATCTGGAATTCCCTATGCAATGGGAGCACAGCCAGCTGGACCCCTTCCAAGAGCTGCTTAA 1749 0.4174 MAGGAIETQSHASKKKFAILGVSSILLIAMVAAVAVGVNDAGQVESEGDNQITKSQKNVKVLCGTTEYKQTCEKSLAKTGNKDMKELIKQAFNATAEELVKQIHNSTLYKELATNDMTKQAMDICKEVLGYAVDDVHQSIHSLDKFDLNKIDEIAYDLKVWLSGTLANQQTCLDGFENTTTHAGQTMAKVLNASLELSNNALDIINGLSGFVKDLNLSSFASALNNNRKLLSEDGLPSWVSQSQRKLLAAPQNVKPNVVVAQDGSGQFKTLTEALATVPKKNKVPFVIHVKAGIYKEYVALDNHRDHVTIIGDGPKKTIFTGSKSYGDGVQTYNTATFSVNSAHFTAFNVGFENSAGAAKHQAVALRVTADKALFYNCEMNGYQDTLYTQSKRQFYRDCTITGTIDFVFGDAVGVFQNCKLIVRKPMATQQCMVTAGGRTKVDSVSALVFQNCHFTGEPEVLTMQPKIAYLGRPWRNFSKVVIVDSLIDGLFVPEGYMPWMGNLFKETCTYLEYNNKGAGAATNLRVKWPGVKTISAGEAAKYYPGKFYEIANATARDDWITESGIPYAMGAQPAGPLPRAA* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4401 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 209 IPR035513 -
Mtr4g4401 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 209 IPR035513 -
Mtr4g4401 582 PANTHER PECTINESTERASE 9 576 - -
Mtr4g4401 582 Pfam Pectinesterase 257 548 IPR000070 GO:0030599|GO:0042545
Mtr4g4401 582 SUPERFAMILY Pectin lyase-like 254 549 IPR011050 -
Mtr4g4401 582 SMART PMEI_2 54 204 IPR006501 GO:0004857
Mtr4g4401 582 PANTHER PECTINESTERASE 9 576 - -
Mtr4g4401 582 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Mtr4g4401 582 Gene3D - 251 572 IPR012334 -
Mtr4g4401 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 52 208 IPR006501 GO:0004857
Mtr4g4401 582 Pfam Plant invertase/pectin methylesterase inhibitor 59 204 IPR006501 GO:0004857
Mtr4g4401 582 CDD PMEI-like_3 62 210 - -
Mtr4g4401 582 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4401 Mtr-Chr4 58008196 58010316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4401 14 577 Carbohydrate Esterase AT3G05610 45.359 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4401 K01051 - gmx:100800194 781.941