Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4400 ATGGCAGGAGGAGCCATTGAAACCCAAAACCATGCCAGTAAGAAGAAGTTCGCCATTCTTGGTGTATCTTCAATCTTACTTATTGCCATGGTGGCCGCGGTGGCTGTTGGTGTAAAAGATGGCGGCCAAGTTGAATCGGAAGGCGGTAACCAAATTGTAAAATCACAAAAAATCGTTCAAGTACTTTGTGGAACAACAGGGTACAAACAAACATGCGAAAAGAGTCTTGCAAAAACAGGAAAAACAGACATGAAGGAATTGATCAAAGCAGTATTCAAAGCAACAGCTGAAGAACTCTCGAAACAAATCCATAACTCAAAACTCTACAAGGAATTAGCTACCAATGACATGACAAAGCAAGCTATGGATATTTGCAAAGAAGTCCTTGGTTATGCAGTTGATGATGTTCATCAATCTATTCACTCATTGGATAAATTTGATATTAGAAAAATTGATGAGATTGCTTATGATCTTAAAGTTTGGCTCTCAGGTACACTTGCCAATCAACAAACATGTTTATATGGATTTGAGAACACAACTACCCATGCAGAACAAACCATGGCTAAGGTTCTTAAGGCTTCTTTGGAGCTAACTAACAATGCTTTGGATATAATCAATGGACTTTCAGGATTTGTAAAAGATCTTAACTTGAGCTCTTTAACAAGTGTTTTGAATAATAATAGGAAGCATTTGTCTGAAGATGGTTTGCCATCATGGGTTTCTCAAAGCCAAAGGAAACTTCTCGCGGCTCCTGAGAACGTTAAGCCTAATGCTGTTGTTGCACAAGATGGTAGTGGTCAATTTAAGACATTGACTGAGGCACTTGCACTAGTTCCCAAGAAAAACCAAGTTCCTTTTGTTATTCATGTTAAGGCTGGTATCTATAAGGAGTATGTTTCTGTGGATAAAGATAGGGACCATGTTACTATTATTGGCGATGGTCCCACAAAGACCATATTTACTGGCAGCAAAAGCTATGCTGATGGTGTGCAGACTTACAATACCGCAACATTCGGTGTGAACTCTGCCCATTTCACCGCCTTGAACGTCGGATTTGAGAACTCAGCCGGTGCCGCAAAGCACCAAGCAGTGGCCCTCCGTGTAACAGCAGACAAAGCATTGTTCTACAACTGTCAAATGGACGGTTACCAAGATACACTCTACACACAATCCAAAAGACAATTCTACCGCGACTGCACTATTAGCGGAACAATTGACTTTGTCTTTGGTGATGCTGTTGGAGTTTTCCAAAACTGCAAGCTCGTCGTTAGAAAACCAATGGCAAATCAACAATGCATGGTGACAGCAGGAGGAAGAACCAAAGTTGACAGTGTATCCGCCCTTGTTTTCCAAAACTGTCATTTCACCGGGGAACCCGAAGTTCTTACCATGCAACCCAAGATAGCTTATTTGGGAAGACCATGGAGAAATTTCTCCAAGGTTGTTATCGTGGATTCTCTCATTGATGGCCTCTTTGTACCAGAGGGTTATATGCCATGGATGGGAAATCTTTTCAAGGAGACATGCACTTATTTGGAATACAACAACAAGGGTGCTGGTGCTGCCACTAATCTTAGAGTGAAATGGCCAGGTGTTAAAACCATCTCTGCCGGTGAAGCTGCTAAATACTATCCAGGAAAGTTTTACGAAATTGCTAACGGAACTGCTCGTGATGATTGGATTACCGAATCTGGAATTCCTTATTCAATTGGAGCACAGCCAGCTGGACCCCTTCCCAGAGCTGAGCTGCTTAATTGA 1758 0.4175 MAGGAIETQNHASKKKFAILGVSSILLIAMVAAVAVGVKDGGQVESEGGNQIVKSQKIVQVLCGTTGYKQTCEKSLAKTGKTDMKELIKAVFKATAEELSKQIHNSKLYKELATNDMTKQAMDICKEVLGYAVDDVHQSIHSLDKFDIRKIDEIAYDLKVWLSGTLANQQTCLYGFENTTTHAEQTMAKVLKASLELTNNALDIINGLSGFVKDLNLSSLTSVLNNNRKHLSEDGLPSWVSQSQRKLLAAPENVKPNAVVAQDGSGQFKTLTEALALVPKKNQVPFVIHVKAGIYKEYVSVDKDRDHVTIIGDGPTKTIFTGSKSYADGVQTYNTATFGVNSAHFTALNVGFENSAGAAKHQAVALRVTADKALFYNCQMDGYQDTLYTQSKRQFYRDCTISGTIDFVFGDAVGVFQNCKLVVRKPMANQQCMVTAGGRTKVDSVSALVFQNCHFTGEPEVLTMQPKIAYLGRPWRNFSKVVIVDSLIDGLFVPEGYMPWMGNLFKETCTYLEYNNKGAGAATNLRVKWPGVKTISAGEAAKYYPGKFYEIANGTARDDWITESGIPYSIGAQPAGPLPRAELLN* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4400 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 210 IPR035513 -
Mtr4g4400 585 PANTHER PECTINESTERASE 9 575 - -
Mtr4g4400 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 209 IPR035513 -
Mtr4g4400 585 SMART PMEI_2 54 204 IPR006501 GO:0004857
Mtr4g4400 585 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Mtr4g4400 585 PANTHER PECTINESTERASE 9 575 - -
Mtr4g4400 585 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 208 IPR006501 GO:0004857
Mtr4g4400 585 Pfam Pectinesterase 257 548 IPR000070 GO:0030599|GO:0042545
Mtr4g4400 585 CDD PMEI-like_3 62 210 - -
Mtr4g4400 585 Gene3D - 251 572 IPR012334 -
Mtr4g4400 585 Pfam Plant invertase/pectin methylesterase inhibitor 58 204 IPR006501 GO:0004857
Mtr4g4400 585 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Mtr4g4400 585 SUPERFAMILY Pectin lyase-like 254 570 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4400 Mtr-Chr4 58002393 58004264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4400 14 577 Carbohydrate Esterase AT3G05610 46.341 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4400 K01051 - gmx:100800194 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4400 4 58002393 58004264 Mtr4g4400 4 58002393 58004264 ECH
Mtr4g4400 4 58002393 58004264 Mtr2g1282 2 13978738 13980397 PCT