Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4399 ATGAATTCGAACATGGATAATGAAAGAGAAATCGAAAACAATTATGCCCTCAGCGGCAAGATAATGCTAACCGCCATTATCATTCTCTTCGCCGTTATCATAATAATGCTCTGTCTCCATTTTCTAATTCGATACTACCTTCTACGTGATCGCACACGTCAACACCTCCGTCGTCAACCTTTCATCTTTTACGTGGACCCGTCCGCCCCTGCTTCACTGACACTCGCCGTCTCTCGGGGCCTTGATGCCTCCGTGATCTCGTCGCTCCCAGTTTTCAATTTTTCCTCCAACACGGATCAAGCGGTGGAATGCGCTGTTTGTTTATCGGAGTTTGAAGATGGAGAAACAGGTCGGGTTTTACCCAAATGTAATCATAGTTTTCATATTGATTGTATTGATATGTGGTTTCAGTCTCATTCTACATGTCCGCTTTGTAGAGCGCCCGTGGAGGCTGCGCCGGTTCAAGCGACCAGACAAGAAGTGACAATTGATATGTGTGAACCGGAATTGGTTTTGGGTTCGAGTTCTGGTGAAGAAATGAACCGGTCTGTATCGGAATTTTCTTCTTCTTGTTCTTCCTCATGTTCTGATGAGAAGCAATCTTCATCGGTTGACATTACCGTTGAGATTCCGAGAAGGAGTGAATCCGATTGCAAGAGTTTTGCTGTGGGAGAGTCGAGTTGTGATTCACCATCATCGTTTCGGTCACCAATGAGTCGTGTTTTGTCGTTCACGAGAATCCTTAGCAGAGAGAGGAAACCAAGCATTTCTCCGTCGTTGGATTGTGCAGAACGAGGTGAAAGGGAGGAGACTCGGTGA 819 0.4591 MNSNMDNEREIENNYALSGKIMLTAIIILFAVIIIMLCLHFLIRYYLLRDRTRQHLRRQPFIFYVDPSAPASLTLAVSRGLDASVISSLPVFNFSSNTDQAVECAVCLSEFEDGETGRVLPKCNHSFHIDCIDMWFQSHSTCPLCRAPVEAAPVQATRQEVTIDMCEPELVLGSSSGEEMNRSVSEFSSSCSSSCSDEKQSSSVDITVEIPRRSESDCKSFAVGESSCDSPSSFRSPMSRVLSFTRILSRERKPSISPSLDCAERGEREETR* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4399 272 SUPERFAMILY RING/U-box 98 151 - -
Mtr4g4399 272 CDD RING-H2_EL5_like 103 146 - -
Mtr4g4399 272 SMART ring_2 104 145 IPR001841 -
Mtr4g4399 272 Pfam Ring finger domain 103 146 IPR001841 -
Mtr4g4399 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 7 220 - -
Mtr4g4399 272 PANTHER RING-H2 FINGER PROTEIN ATL64 7 220 - -
Mtr4g4399 272 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Mtr4g4399 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 152 IPR013083 -
Mtr4g4399 272 SMART FANCL_C_2 100 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4399 Mtr-Chr4 57999064 58000504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4399 6 262 Rapid Response to Elicitors AT3G16720 48.399 2.71e-63 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4399 - - gmx:100791545 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4399 4 57999064 58000504 Mtr4g4399 4 57999064 58000504 ECH
Mtr4g4399 4 57999064 58000504 Mtr2g1285 2 14004685 14006017 PCT