Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4386 ATGTCTTCTACAGAACTTGATCATCGGAGTAATGGTGTCCACTTTTTCAAGATTATTCTTCAAAGGAACCTTAATGAAGGAAAACTGAAAGTGCCCGTAAGTTTTGTGAGAAGGCATTGGCTAGGTATAACAAATCCAGTTACTCTAAGACTTCCAAATATGACCGAAAATAAAGTTTTTTGGGAGAAAACTAGTGATTATAATGTTTGGTTTTGCAATGGTTGGAAAGAATTTGCAAAATATTTGTCTTTGGGTGATTCACAGCTTACGTTGTTTCAATATCAAGAAAATTCTGTGTTCAATGTGATTGTATGCGGTAAATGCGGATTAGAAATAAAATATCCTTTAAAAGAAACTAACAAAGAACATGAAGAGGTTGAAGAGAGCGATACTTCTTTACAAATTATTGAAGATCCTTCATCATCGAAGGGTAAAAGACTAAAATCTTCACCACCTTATTTTAAAAAGATGAAAATCAATTCAAAAGAACAAAAAGAACCTAAGCATGAGAAGAGAAAAGTCCAAGAACAAGGAAGGTTTCTTAACTTCAAGGATACGGACAATGGAAGTAGTTGTGATGATCTTAAGGAGAGAAGCAAAGTTTTGTACGACAAAGTGAAGAATTTTTTCCACGCTGATATGGATTTCTTCATGTGTATGATCCAAAAGACATACATTAAGAAAGATGTCTTGGGCATACCAATTGAATTTGCTAAGAAACATCTGCACAGGATGGAAGGAAGAAATATTACTCTTTTTGTTGATCAAGACAGACCATGGAATGCTGATTTGAATCTCACTTTAAATAATCAATATACACTAAGTGGTGGTTGGAGTAAATTTCGTGCTCACAATAATTTGAAGTTTGGTGATATCTGTGTTTTTATGCTGAACAAATGCAAAGGAACAGTTTCATTCCAAGTTAAGATTTTCTCTCTAGAAAAAGACATGAGCACTCCTTATTTTGAAGGGTAA 975 0.3364 MSSTELDHRSNGVHFFKIILQRNLNEGKLKVPVSFVRRHWLGITNPVTLRLPNMTENKVFWEKTSDYNVWFCNGWKEFAKYLSLGDSQLTLFQYQENSVFNVIVCGKCGLEIKYPLKETNKEHEEVEESDTSLQIIEDPSSSKGKRLKSSPPYFKKMKINSKEQKEPKHEKRKVQEQGRFLNFKDTDNGSSCDDLKERSKVLYDKVKNFFHADMDFFMCMIQKTYIKKDVLGIPIEFAKKHLHRMEGRNITLFVDQDRPWNADLNLTLNNQYTLSGGWSKFRAHNNLKFGDICVFMLNKCKGTVSFQVKIFSLEKDMSTPYFEG* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4386 324 CDD B3_DNA 14 105 IPR003340 GO:0003677
Mtr4g4386 324 SUPERFAMILY DNA-binding pseudobarrel domain 212 312 IPR015300 -
Mtr4g4386 324 Gene3D - 8 108 IPR015300 -
Mtr4g4386 324 Pfam B3 DNA binding domain 216 311 IPR003340 GO:0003677
Mtr4g4386 324 MobiDBLite consensus disorder prediction 123 152 - -
Mtr4g4386 324 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Mtr4g4386 324 CDD B3_DNA 216 312 IPR003340 GO:0003677
Mtr4g4386 324 Gene3D - 195 315 IPR015300 -
Mtr4g4386 324 ProSiteProfiles B3 DNA-binding domain profile. 216 314 IPR003340 GO:0003677
Mtr4g4386 324 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 312 - -
Mtr4g4386 324 SMART B3_2 15 108 IPR003340 GO:0003677
Mtr4g4386 324 SMART B3_2 216 314 IPR003340 GO:0003677
Mtr4g4386 324 PANTHER B3 DOMAIN-CONTAINING 7 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4386 Mtr-Chr4 57877569 57880307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4386 15 130 B3 DNA Binding Superfamily AT1G49475 37.931 3.07e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr4g4386 B3 8.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4386 - - mtr:MTR_4g119990 666.381