Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4361 ATGATGGATAACAACGTTGGAGGAAGTTCCTTTAGTAATGATGAAAACGGAGGCATAATAAAGGAACAAGATAGGTTGTTACCAATAGCAAATGTTGGGAGGATAATGAAGCAGATATTACCACAGAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTGTCAGAGTTTATAAGCTTTGTGACAAGTGAAGCATCAGAGAAATGCAGGAAGGAAAGGAGAAAGACAGTGAATGGTGATGATATCTGTTGGGCTTTGGGTACACTTGGTTTTGATGATTATGCTGAACCAATGAGAAGGTATTTGCATAGATATAGAGAATTAGAGCATGCTTTAGTTGATTTGCTGAACTTGAGATCCCTTGACTTTGTATATTTAGAATTGAAAGTGTTGAACTTGTTCACATCAGAGTATATTCATCATCCTGACCTCTTCTTCTACCGAAGTTCACAACAAGACTTGCGATTACAGCATTACGCTGCAGACTTTCAGAGCCGGCCCAAGGGCCAAGCCACCCAAGCAAGGTACTGGGGTTCGAACCCCGATCATGGCATCCGGCCTAACAATTTCGGCATTTTGCCAGTTGAGCTAGGACTTCTGGATACCCAAGCAAGGGCTTTAAGCCTCAAAATTTTGAGTTGA 654 0.4113 MMDNNVGGSSFSNDENGGIIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYAEPMRRYLHRYRELEHALVDLLNLRSLDFVYLELKVLNLFTSEYIHHPDLFFYRSSQQDLRLQHYAADFQSRPKGQATQARYWGSNPDHGIRPNNFGILPVELGLLDTQARALSLKILS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4361 217 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mtr4g4361 217 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Mtr4g4361 217 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 2 114 - -
Mtr4g4361 217 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Mtr4g4361 217 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Mtr4g4361 217 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Mtr4g4361 217 Gene3D Histone, subunit A 19 116 IPR009072 GO:0046982
Mtr4g4361 217 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mtr4g4361 217 SUPERFAMILY Histone-fold 23 113 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4361 Mtr-Chr4 57671493 57672710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4361 19 113 CCAAT-HAP3 Transcription Factor Family AT2G47810 80.000 8.05e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr4g4361 CBFD_NFYB_HMF 1.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4361 K08065 - gmx:100794513 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4361 4 57671493 57672710 Mtr2g1343 2 14600988 14602818 PCT