Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4353 ATGTTCAGTCCAAGCATGGATTCTGCAAGGGATGTGGGTGGTGTTGTTGCCGCAGGGACGGTGCTGATTCCAGTGCGGTTTGTGTGGCCATATGGGGGAAGAACTGTTTATCTCAGTGGTTCTTTCACAAGGTGGTCTGAGCTTCTGCAAATGTCACCAGTTGAAGGTTGTCCAACTGTGTTTCAAGTTATTCATAACTTGGCCCCTGGCTATCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAGCACACCCCCCATATAACCGGAGATTATGGGATAGTTAACACTGTATTATTGGCTACTGATCCTTTCGTACCTGTTTTACCTCCGGACATAGTTTCTGGGTCCAACATGGATGTTGACAATGAGACTTTTCAGCGTGTGGTCCGATTGACAGATGGTACATTGAGTGAGGTGATGCCAAGAATATCAGATGTTGATGTACAGACCTCACGCCAACGTATTTCTACATACTTGTCTATGCGCACAGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTACCTTGGATGTTGATCTACCAGTGAAGCAAGCATTTCACATACTACATGAGCAGGGAATTCCCATGGCTCCTCTTTGGGATTTCTGCAAGGGGCAGTTTGTTGGAGTTCTGAGCGTTTTGGATTTTATTTTAATTTTAAGAGAGCTTGGGAATCATGGGTCCAATCTGACAGAAGAAGAGCTTGAAACACATACCATATCAGCTTGGAAGGAGGGAAAATGGACTTTATTTTCAAGACGTTTCATCCATGCAGGGCCATCTGATAATTTGAAAGATGTTGCTCTAAAGATTCTGCAAAATGGAATTTCAACTGTTCCTATTATCCATTCATCTTCTGCAGATGGTTCATTTCCACAACTACTACATCTTGCTTCACTTTCAGGGATCCTTAGATGCATTTGCAGGTATTTTAGGAGTTGTTCTAGTTCATTGCCCATACTTCAACTTCCAATTTGTGCAATTCCTGTGGGCACATGGATGCCCAAAATTGGGGAGACAAATCGCCGGCCTCTAGCAACATTGAGACCAAATGCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCTCAAGTAAGTTCAATACCAATAGTTGATGAGAGCGACTCTTTACTGGATATATATTGTCGGAGTGATATAACAGCCTTGGCAAAAGACAGAGCTTATACACACATTAATCTTGATGAAATGACAGTTCATCAGGCATTGCAGTTGAGCCAGGATGCTTTTAATCCTAATGAGTCGAGAAGTCAAAGATGTCAGATGTGTTTGCGAACTGATTCTTTGCATAAAGTGATGGAACGCTTGGCAAACCCAGGTGTCCGGCGGCTTGTTATTGTTGAAGCTGGCAGCAAGCGAGTTGAAGGCATCATATCACTGACCGACATATTTAAGTTTTTCCTTTGTTAG 1446 0.4281 MFSPSMDSARDVGGVVAAGTVLIPVRFVWPYGGRTVYLSGSFTRWSELLQMSPVEGCPTVFQVIHNLAPGYHQYKFFVDGEWRHDEHTPHITGDYGIVNTVLLATDPFVPVLPPDIVSGSNMDVDNETFQRVVRLTDGTLSEVMPRISDVDVQTSRQRISTYLSMRTAYELLPESGKVVTLDVDLPVKQAFHILHEQGIPMAPLWDFCKGQFVGVLSVLDFILILRELGNHGSNLTEEELETHTISAWKEGKWTLFSRRFIHAGPSDNLKDVALKILQNGISTVPIIHSSSADGSFPQLLHLASLSGILRCICRYFRSCSSSLPILQLPICAIPVGTWMPKIGETNRRPLATLRPNASLASALNLLVQAQVSSIPIVDESDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLSQDAFNPNESRSQRCQMCLRTDSLHKVMERLANPGVRRLVIVEAGSKRVEGIISLTDIFKFFLC* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4353 481 SUPERFAMILY E set domains 23 104 IPR014756 -
Mtr4g4353 481 Pfam Glycogen recognition site of AMP-activated protein kinase 23 103 IPR032640 -
Mtr4g4353 481 Gene3D Immunoglobulins 20 103 IPR013783 -
Mtr4g4353 481 ProSiteProfiles CBS domain profile. 345 402 IPR000644 -
Mtr4g4353 481 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 13 480 - -
Mtr4g4353 481 SMART cbs_1 349 397 IPR000644 -
Mtr4g4353 481 SMART cbs_1 177 226 IPR000644 -
Mtr4g4353 481 SMART cbs_1 259 313 IPR000644 -
Mtr4g4353 481 SMART cbs_1 431 480 IPR000644 -
Mtr4g4353 481 ProSiteProfiles CBS domain profile. 171 233 IPR000644 -
Mtr4g4353 481 CDD E_set_AMPKbeta_like_N 24 102 - -
Mtr4g4353 481 Gene3D - 148 321 IPR046342 -
Mtr4g4353 481 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 13 480 - -
Mtr4g4353 481 SUPERFAMILY CBS-domain pair 157 317 IPR046342 -
Mtr4g4353 481 Pfam CBS domain 346 393 IPR000644 -
Mtr4g4353 481 Pfam CBS domain 434 479 IPR000644 -
Mtr4g4353 481 Gene3D - 329 481 IPR046342 -
Mtr4g4353 481 SUPERFAMILY CBS-domain pair 332 480 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4353 Mtr-Chr4 57589050 57597423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4353 19 106 Protein tyrosine phosphatase (PTP) family AT3G01510 33.333 3.37e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4353 - - aprc:113874669 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4353 4 57589050 57597423 Mtr4g4353 4 57589050 57597423 ECH