Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4352 ATGGGCCCTACCAGGAAATCTAGAAGTGTAAATAAGAGGTTCTCTAATATTCGTGAGGCTGCAGCTAGTAAAGATAAAGATGCAGCAAATACCGGCAGGAATAGGCAGAAGGCTTGTCCTGGTATTCAGAAGAAGAGAAAATTGGCTGATATGTTAGGACCACAATGGAGTAAGGCGGAGCTTGAGCGTTTCTATGAAGCTTACCGTGAATATGGGAAAGATTGGAAGAAGGTTGCTCTTGCAGTACGTAATAGGACCATGGAAATGGTAGAAGCCCTGTACACTAAGAACAGGGCATACCTGTCTCTTCCAGAGGGCACTGCTTCTGTGGTTGGGCTGATAGCAATGATGACAGACCATTATAGTATTCTGGGAGGAAGTGACAGTGGAAAAGAAAGCAATGAAGATTCAGAAATAATGAAAAAGTCTAAAAAACGTCCACGGGGAAAGCCAAATGACAATAAAGCAGTAGATGGACACTTTTCAGATCATTCGCAGCCACATTCTGTTGCATCGGATGATGGTTGCCTGTCATTGTTGAAGAAGAGGCATTCTGGAATTAGGCCTCATGCTGTTCGAAAAAGGACTCCCCGTGTCCCTATTTCATATTCTATTGGCAAAGATAATGAGGGAAAGTTTTTTTCATCTGCTAGGCAGGACTCCAAACAAATGATTGATACAACTGATGTCACTCATAAAATTGCATTAGCATTATCAGAGGCTTCACAGAGAGGTGGTTCTTCAAAAAAAGTTGGATCGCCAAACAAGAAAAACATGCCATCACCCAATCTGAAAAGTGGGAAGAAGCATGTTAAATCAGGAATAGTTGGAGCAAAGTTTCGCAAATCTGACATGGATGAAGCTAGTTCTGAGTTGAGTTTAGGAAGCACAGAAGGTGATAATGGAGATTATTCTGGAAAATTAATTCATCGGAACAGTAGAGAAAATACTGGAAGAGTAAGGAACCAGGAAAAGGGAATAAAACACTACAGAAAGAGTTTAGAACCCCAGAAAAATACAAACAAGCATTTGAATGACATAAAGGAGGCCTCCAGTGGAACCGATGATGGAAAAAACCAGAGTTCCTTCAAGTCCAATTTTGACACAGATTTTGCAAATGCAAAAAGTGTGAGGTCTTCTTACAAGGGTCCCAGAAAGAAAAGTAAAAAGCAACATTTTGAGGAAGATGAAGGTTCGGCTTTTGATGCTCTGAAAACTTTGGCTGATCTATCTTTGATGATGCCAGAAACAAACCCTGACACTGTTTTTCATTTAACATTTTGGTGCCTGAGCTATAAAGGAGGAAATTGTGCTCCAATTTTCACAAGCTCTGACTCAAACACATTAATAATTAGCTTTCAACAGTTTGAATCATTTGTGCAGTTCAATGAAGGAAACCTTGATGAGTCTAAAATGGAAACAGATAACGGAAACAGTTCAAGAAAATCGGGCAAGGTTTTTTCTGATAAAGGAGATGCTGCTCCCAAAGCAGAGGGAGCATACCAGCTCAGTGCTGGAAGCAGGAAAAGAAAACAAAAATCTCTTACTTTAAATAATGATGAAACACATACTGGTTCTCCTTTAAGTGGTTCCCAGAAAATCAAGGTTACTGATGAGGTGAAGAAGTCCACGGTTAAAGGCAAGCGGTCATCTGTTAGTACAGCTCATTCCAGAAACCTAAATATGGTGAAATCCCTAGGAAATATGTCTTCAAATATCGTTGACAAAGCAGAAAGGGGTGATTCATCCTTTTCCCCCATAATTTTTTTGTCTACTAACCAAGTCGGTCAAGCAAACAGAGTCCGACCTAGAAGAAAGATGGAAAAACCAAAACCAATGGTACAACAAGATCATACAATGTCTGAAAATAATTTTAGTGGTCAACATGATAAATCCATCGCTTTATACTGGAGAAATAGTATGGAACGTCATAAGGGAATGCTTATTAATTGTCTGTCTTCACATCAAACGCGGCGATGGTGCATCTCTGAATGGTTTTATAGTGCTATTGATTATCCATGGTTTTCAAAGAGAGAGTTTGTAGAATACTTAGAACATGTTGGACTGGGTCATGTTCCCAGATTGACTCGTATTGAGTGGGGAGTCATTAGAAGTTCTCTTGGTAGACCACGAAGATTTTCAGAGCAATTTTTGACAGAAGAAAAACATAAACTTAATCAGTACCGGGAATCTGTCAGATCACATTATGCTGAAGTTCTTGCTGGTACCAAGGAAGGCCTACCTGCTGATTTGGCCCAGCCATTAATTGTTGGGCAGCGTGTTATTGCTATCCATCCAAAGACAAGGGAGATTCATGATGGAAGTATACTGACTGTTGACCATTGTAGATACCGGGTTCAGTTTGACCAGCATGAACTTGGGGTTGAATTTGTCATGGATATTGACTGCATGCCTTTGTATCCATCTGAAAATATGCCCATGTCTCTGATAAGACACCATATTACTCCTGCTAGAATGAATGAGAACCTTAGAGATCTTACGCACAATGGGAAACTAACAGAAAGAAAGATCTCTGAGCACACAATGTTGTCCCCAACTGAGAAGTCAGATGCCATTAAAGGTCGCTGTGTACCATCCGCTATGCATGGTTTTTCTTCAAGCTGCAAATCACAAGCAAAAGTTGCGGGCAGTGAGATCTGTAATGGCCAATCAGCATCAAGTTCTCATTCTTCCTTTCTTGAACAACTCCAATCAAAAGAAGCTGATATATTAGCTATTTCAGAATTGACTCGTGCTCTAGAAAAGAAGGAACTTGTGTTGTCGGAACTGAAGCACATGAATGATGGGGTATCAGAAAGCCAGAAATACGGAGAGAACTCGGTGAAAGATTCGGAACCTTTTAAAAGGAATTATGCTTCAGTACTAAAGCAATTAACTGAAGCAAATGAACAGGTTTCTTCTAGCTTATTTTGCTTGAGGCAACGCAATGCATATCAAGCAAGCTCCTCAGTTTTGTCATTGAAGCCCATTGCAAATTTAGAGGATCCTGGTGGTCACGCTAGCTCTTCCAATTGCTCAGCTTGCCACAACCAAGAATCTATATCTCAAAGTCACATAGCTGAAATTGTTGAAAGTTCTAGAAGAAAAGCCCGAACCATGGTTGTTCAAGCTACTCAGGCAATGTCAGTTTTCAGAAAGACAGAAAGTAAGGTTGAAAGAGTTGAGGATGTAATAAATTTTATCAATAACCGGCTTTCGGTTGATGACTCTACTGCTTCAGCCACAAATTTTCTGGCCATAGATTCTATTACTTTGGCTTCTCGTGATCAATTGACTGCTAGCAGCACATTAAACATTTTGGCAAGGTGTCCTGTACAAGATGATGAACTTAACAGTTCGTCTGACCAAAATGAAATGAAAATCCCCTCAGAACTCATATCTCATTGTCTAGCTACACTGCTCATGATTCAGAAGTGTACGGAAAGACAATTTCCCCCAGCTGATGTTGCGCAGGTATTAGATTCCGCTGTTACCAGTTTGCAGCCATTTTGTTCAAAGAATCTACCAATATATGGTGAGATACAGAAATGCATGGGTATCATAAGAAATCAGATATTGGCACTCATACCTACCTAG 3597 0.4017 MGPTRKSRSVNKRFSNIREAAASKDKDAANTGRNRQKACPGIQKKRKLADMLGPQWSKAELERFYEAYREYGKDWKKVALAVRNRTMEMVEALYTKNRAYLSLPEGTASVVGLIAMMTDHYSILGGSDSGKESNEDSEIMKKSKKRPRGKPNDNKAVDGHFSDHSQPHSVASDDGCLSLLKKRHSGIRPHAVRKRTPRVPISYSIGKDNEGKFFSSARQDSKQMIDTTDVTHKIALALSEASQRGGSSKKVGSPNKKNMPSPNLKSGKKHVKSGIVGAKFRKSDMDEASSELSLGSTEGDNGDYSGKLIHRNSRENTGRVRNQEKGIKHYRKSLEPQKNTNKHLNDIKEASSGTDDGKNQSSFKSNFDTDFANAKSVRSSYKGPRKKSKKQHFEEDEGSAFDALKTLADLSLMMPETNPDTVFHLTFWCLSYKGGNCAPIFTSSDSNTLIISFQQFESFVQFNEGNLDESKMETDNGNSSRKSGKVFSDKGDAAPKAEGAYQLSAGSRKRKQKSLTLNNDETHTGSPLSGSQKIKVTDEVKKSTVKGKRSSVSTAHSRNLNMVKSLGNMSSNIVDKAERGDSSFSPIIFLSTNQVGQANRVRPRRKMEKPKPMVQQDHTMSENNFSGQHDKSIALYWRNSMERHKGMLINCLSSHQTRRWCISEWFYSAIDYPWFSKREFVEYLEHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLTEEKHKLNQYRESVRSHYAEVLAGTKEGLPADLAQPLIVGQRVIAIHPKTREIHDGSILTVDHCRYRVQFDQHELGVEFVMDIDCMPLYPSENMPMSLIRHHITPARMNENLRDLTHNGKLTERKISEHTMLSPTEKSDAIKGRCVPSAMHGFSSSCKSQAKVAGSEICNGQSASSSHSSFLEQLQSKEADILAISELTRALEKKELVLSELKHMNDGVSESQKYGENSVKDSEPFKRNYASVLKQLTEANEQVSSSLFCLRQRNAYQASSSVLSLKPIANLEDPGGHASSSNCSACHNQESISQSHIAEIVESSRRKARTMVVQATQAMSVFRKTESKVERVEDVINFINNRLSVDDSTASATNFLAIDSITLASRDQLTASSTLNILARCPVQDDELNSSSDQNEMKIPSELISHCLATLLMIQKCTERQFPPADVAQVLDSAVTSLQPFCSKNLPIYGEIQKCMGIIRNQILALIPT* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4352 1198 MobiDBLite consensus disorder prediction 241 262 - -
Mtr4g4352 1198 MobiDBLite consensus disorder prediction 1 40 - -
Mtr4g4352 1198 SMART sant 52 100 IPR001005 -
Mtr4g4352 1198 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Mtr4g4352 1198 MobiDBLite consensus disorder prediction 1 16 - -
Mtr4g4352 1198 MobiDBLite consensus disorder prediction 304 353 - -
Mtr4g4352 1198 MobiDBLite consensus disorder prediction 125 172 - -
Mtr4g4352 1198 Gene3D - 4 108 - -
Mtr4g4352 1198 MobiDBLite consensus disorder prediction 598 625 - -
Mtr4g4352 1198 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1198 IPR028306 -
Mtr4g4352 1198 MobiDBLite consensus disorder prediction 239 366 - -
Mtr4g4352 1198 MobiDBLite consensus disorder prediction 467 554 - -
Mtr4g4352 1198 Pfam Myb-like DNA-binding domain 55 90 IPR001005 -
Mtr4g4352 1198 Pfam DIRP 665 766 IPR033471 -
Mtr4g4352 1198 CDD SANT 56 100 IPR001005 -
Mtr4g4352 1198 SMART DIRP_2 666 767 IPR033471 -
Mtr4g4352 1198 Coils Coil 913 933 - -
Mtr4g4352 1198 MobiDBLite consensus disorder prediction 18 32 - -
Mtr4g4352 1198 PANTHER LIN-9 1 1198 IPR010561 GO:0006351|GO:0017053
Mtr4g4352 1198 SUPERFAMILY Homeodomain-like 52 99 IPR009057 -
Mtr4g4352 1198 MobiDBLite consensus disorder prediction 507 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4352 Mtr-Chr4 57566364 57587401 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr4g4352 DIRP 4.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4352 - - gmx:100811517 1704.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4352 4 57566364 57587401 Mtr4g4352 4 57566364 57587401 ECH