Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4350 ATGGAACCAAGGTACGGCCGAGCTAACGATGGGTCGTCGCAGTTGCACTCTGATCCGTCGCCGGAATGGACTTCCGTCGGTGCTGATGAAGGATATGGTGGATTGGTTGGTGGTGGTGGTGAATCGTATCCACAACGACCTGATGAAGCTGATTGTATCTATTATTTGAGGACAGGTTTTTGCGGTTATGGTTCTAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCCGGGGAATATCCAGAACGAGTTGGACAGCCAGTTTGCCAGTACTATGCGAGGACGGGATCGTGCAAATTTGGCGCTTCCTGCAAGTATCACCATCCTAGACAGGCGGCAGGAACTACTCCTCCTGTGTCACTAAATTGTTATGGATATCCATTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACATGTAAATTCCATCATCCACAGCCTGCGGGTGGCCAAATGATAGCACCATCACCAGTTCCCCAAGTTTCACCTCTACCAATGCCGGTACCATCACCTATTTATCAAACTGTACAGCCTCCATCCGGTCCTTCACAACAACAATATGGTGTACTTGTTGCGAGGCCACCTCTTCTACATGGCTCATTTGTCCAGGGCCCTTATGGGCCAATGGTAATGTCCCCCACCATGGTCCCTTTTTCAGGCTGGAGCCCTTATCAGGCTCCAGCAGGAAGTCCTGTACTTCCTTCTAGTAATCCGTTGAGTGTTGGTTCAACACAGCTTTATGGGATAACTCAGCTTCCTTCACCAACAACTGCCTACACTCAGCTACCTTCACCGACAACTGCCTACACTGGACCTTATCAATCCTCTGGTCCCTCAGCTGGTCCTTATCAATCTTCTGGTCCCTCAGCTGGTCCTTATCAATCTTCTGGTCCATCAACCGGTCCTTCAGGTAGTAGTCAGAAGGAACACTCATTACCTGAAAGGCCTGATCAGCAGGAATGTCAGCATTACATGAAAACAGGGGACTGTAAATTTGGTTCTACATGTAGATATCATCATCCGCCGGACATGGGTGCACCAAAAGTGAACCTAAGTCCTATTGGCCTTCCTTTGCGCCCGGGAGCACAACCTTGCACTCATTATACCCAGCGTGGATTTTGCAAGTTTGGATCTGCATGTAAATTCGATCATCCTACGGGATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTTTCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCCGCCATTGGTACTCTTGCCCCATCATCCTCATCATCCGAGTTGAGGCCTGAACTTGCATCAGGATCCAGCAAGGAGCCTGCTTCATCCAGAATGTCATCATCAATGAGCACATCGACTGCTTCAGCTGGCTTGACTTTGTCAACGGTTGTACCGGTTTCTCAATCAGATGCCCAACCATCTTCTCAGAGTTCCGGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACCGTCTCTCACACCTCAAGCTAA 1536 0.4954 MEPRYGRANDGSSQLHSDPSPEWTSVGADEGYGGLVGGGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPVCQYYARTGSCKFGASCKYHHPRQAAGTTPPVSLNCYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGGQMIAPSPVPQVSPLPMPVPSPIYQTVQPPSGPSQQQYGVLVARPPLLHGSFVQGPYGPMVMSPTMVPFSGWSPYQAPAGSPVLPSSNPLSVGSTQLYGITQLPSPTTAYTQLPSPTTAYTGPYQSSGPSAGPYQSSGPSAGPYQSSGPSTGPSGSSQKEHSLPERPDQQECQHYMKTGDCKFGSTCRYHHPPDMGAPKVNLSPIGLPLRPGAQPCTHYTQRGFCKFGSACKFDHPTGSLSYSPSASSLSDMPVAPYPVGSAIGTLAPSSSSSELRPELASGSSKEPASSRMSSSMSTSTASAGLTLSTVVPVSQSDAQPSSQSSGSLATPSATTSSTVSHTSS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4350 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 336 360 IPR000571 GO:0046872
Mtr4g4350 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Mtr4g4350 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 381 403 IPR000571 GO:0046872
Mtr4g4350 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Mtr4g4350 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Mtr4g4350 511 PANTHER PROTEIN PHOSPHATASE RELATED 4 294 - -
Mtr4g4350 511 PANTHER PROTEIN PHOSPHATASE RELATED 307 501 - -
Mtr4g4350 511 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 4 294 - -
Mtr4g4350 511 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 307 501 - -
Mtr4g4350 511 SUPERFAMILY CCCH zinc finger 138 165 IPR036855 GO:0046872
Mtr4g4350 511 MobiDBLite consensus disorder prediction 1 42 - -
Mtr4g4350 511 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Mtr4g4350 511 SMART c3hfinal6 139 164 IPR000571 GO:0046872
Mtr4g4350 511 SMART c3hfinal6 333 360 IPR000571 GO:0046872
Mtr4g4350 511 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Mtr4g4350 511 SMART c3hfinal6 377 404 IPR000571 GO:0046872
Mtr4g4350 511 Gene3D - 44 123 - -
Mtr4g4350 511 Gene3D - 331 418 - -
Mtr4g4350 511 SUPERFAMILY CCCH zinc finger 380 407 IPR036855 GO:0046872
Mtr4g4350 511 Gene3D - 126 173 - -
Mtr4g4350 511 MobiDBLite consensus disorder prediction 275 335 - -
Mtr4g4350 511 ProSiteProfiles Zinc finger C3H1-type profile. 333 361 IPR000571 GO:0046872
Mtr4g4350 511 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Mtr4g4350 511 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Mtr4g4350 511 MobiDBLite consensus disorder prediction 434 511 - -
Mtr4g4350 511 MobiDBLite consensus disorder prediction 275 327 - -
Mtr4g4350 511 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Mtr4g4350 511 ProSiteProfiles Zinc finger C3H1-type profile. 377 405 IPR000571 GO:0046872
Mtr4g4350 511 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Mtr4g4350 511 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Mtr4g4350 511 SUPERFAMILY CCCH zinc finger 335 361 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4350 Mtr-Chr4 57530058 57534330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4350 4 473 C2H2 Transcription Factor Family AT5G18550 52.881 1.04e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr4g4350 zf-CCCH 5.4e-07 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4350 4 57530058 57534330 Mtr4g4350 4 57530058 57534330 ECH
Mtr4g4350 4 57530058 57534330 Mtr2g0651 2 6573225 6579152 PCT