Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4349 ATGTCAACCTCTAAAAAGATCACATCAGATTCATCTTTCAAAGGATATCATGAAACAAATCAAACACAAATGTGTCTGTCTCTACTTCAAAGAAACACAAACACATCACCTAGTGGTGAAAAAAGAGGAAGAAGGAAACAATCAGAACCAGGAAGGTTTCTTGGTGTTAGGAGAAGACCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACTAAAGAAAGACATTGGCTTGGTACTTTTGATACTGCTCAAGAAGCTGCTCTTGCTTATGATAGAGCTGCTATTTCCATGAAAGGAAATCAAGCTAGAACTAATTTCATTTACTCTGATACTATCAATTTTCACACACTTGTTTCTTCTCCTATGGATCTTCAAACTCTCTTACCAGCTTCACAGTTACTCACTAACACTCAAACCAATCAAAATACTACTCTTTCTCACCTTAACACTGCACACACTAGTAAAAATGATCAAAACCTTTCCTCATTCAACAATGACATGATCATGAGTACTTTTGATCATGAAAAAACAACATCTTATGCATCAACTCATGATGATAATTTCTTCTTTTCCAATGACACTAATAACTCTGGCTATTTAGAATGCATTGTACCTGATAACTGTTTCAGACCTGCTTCAAACACAAGAAAAAGCAATGTAAGTGCTTCAAGTGATGAAAAAGTTGATAACAATGCAGAAAGAAACAAAATTTCAATGGAGGGTCAATCACATTTTGGTATGACTTCATTCTCTCAAGAAATGCCTAACTTTTCAGAGTTTTCTTATAGTCCAAGTGAAATCTGCAGTCAAGGTTTCTTGGATTGGAATTCTAACGAACTTTCAGCTATATTTAACAACAAACCATTAAGAGTTGAAGATGAATGCATGGATACATTAATGTATCCTAATTATCCCATCATTGAAAATCTAAGCACAAACTATGTGATGATGAATGATCAAGCTGCTTCTTCATCAAACTATTCTCCATCGCTTGAATTTGGTTACCCTCTCTTTTAA 1023 0.349 MSTSKKITSDSSFKGYHETNQTQMCLSLLQRNTNTSPSGEKRGRRKQSEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAAISMKGNQARTNFIYSDTINFHTLVSSPMDLQTLLPASQLLTNTQTNQNTTLSHLNTAHTSKNDQNLSSFNNDMIMSTFDHEKTTSYASTHDDNFFFSNDTNNSGYLECIVPDNCFRPASNTRKSNVSASSDEKVDNNAERNKISMEGQSHFGMTSFSQEMPNFSEFSYSPSEICSQGFLDWNSNELSAIFNNKPLRVEDECMDTLMYPNYPIIENLSTNYVMMNDQAASSSNYSPSLEFGYPLF* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4349 340 MobiDBLite consensus disorder prediction 38 53 - -
Mtr4g4349 340 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Mtr4g4349 340 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677
Mtr4g4349 340 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Mtr4g4349 340 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Mtr4g4349 340 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 334 - -
Mtr4g4349 340 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF086 1 334 - -
Mtr4g4349 340 MobiDBLite consensus disorder prediction 24 53 - -
Mtr4g4349 340 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Mtr4g4349 340 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Mtr4g4349 340 Pfam AP2 domain 55 101 IPR001471 GO:0003700|GO:0006355
Mtr4g4349 340 CDD AP2 52 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4349 Mtr-Chr4 57524822 57526025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4349 1 213 AP2-EREBP Transcription Factor Family AT5G18560 45.600 7.03e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g4349 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4349 - - cam:101500468 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4349 4 57524822 57526025 Mtr2g0652 2 6579841 6581204 PCT